Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01650 and AMB_RS01655 are separated by 170 nucleotides AMB_RS01655 and AMB_RS01660 are separated by 62 nucleotides
AMB_RS01650: AMB_RS01650 - ATPase, at 363,896 to 366,556
_RS01650
AMB_RS01655: AMB_RS01655 - hypothetical protein, at 366,727 to 367,344
_RS01655
AMB_RS01660: AMB_RS01660 - class I SAM-dependent RNA methyltransferase, at 367,407 to 368,723
_RS01660
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.570 kb on - strand at 366.570 kb on - strand at 366.601 kb on + strand at 366.602 kb on - strand at 366.602 kb on - strand at 366.608 kb on - strand at 366.608 kb on - strand at 366.646 kb on + strand at 366.650 kb on - strand at 366.669 kb on + strand at 366.670 kb on - strand at 366.670 kb on - strand at 366.770 kb on - strand at 366.784 kb on - strand at 367.062 kb on + strand, within AMB_RS01655 at 367.092 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.244 kb on - strand, within AMB_RS01655 at 367.349 kb on - strand at 367.371 kb on - strand at 367.371 kb on - strand at 367.701 kb on - strand, within AMB_RS01660 at 367.701 kb on - strand, within AMB_RS01660 at 367.822 kb on + strand, within AMB_RS01660 at 367.823 kb on - strand, within AMB_RS01660 at 367.823 kb on - strand, within AMB_RS01660 at 367.847 kb on + strand, within AMB_RS01660 at 367.847 kb on + strand, within AMB_RS01660 at 367.848 kb on - strand, within AMB_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 366,570 - -1.3 366,570 - -0.2 366,601 + +0.4 366,602 - -1.9 366,602 - +0.2 366,608 - +0.3 366,608 - +0.3 366,646 + -1.3 366,650 - +1.8 366,669 + -0.7 366,670 - +0.4 366,670 - -0.4 366,770 - -0.1 366,784 - -1.6 367,062 + AMB_RS01655 0.54 -1.5 367,092 - AMB_RS01655 0.59 -0.5 367,126 - AMB_RS01655 0.65 -1.1 367,126 - AMB_RS01655 0.65 +0.5 367,244 - AMB_RS01655 0.84 -0.5 367,349 - +0.0 367,371 - +1.5 367,371 - -1.8 367,701 - AMB_RS01660 0.22 +0.2 367,701 - AMB_RS01660 0.22 +0.2 367,822 + AMB_RS01660 0.32 -0.0 367,823 - AMB_RS01660 0.32 -0.1 367,823 - AMB_RS01660 0.32 -3.1 367,847 + AMB_RS01660 0.33 -3.5 367,847 + AMB_RS01660 0.33 -2.6 367,848 - AMB_RS01660 0.33 -0.0
Or see this region's nucleotide sequence