Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01470 and AMB_RS01475 overlap by 32 nucleotides AMB_RS01475 and AMB_RS01480 overlap by 7 nucleotides AMB_RS01480 and AMB_RS01485 overlap by 2 nucleotides
AMB_RS01470: AMB_RS01470 - two-component sensor histidine kinase, at 324,957 to 326,366
_RS01470
AMB_RS01475: AMB_RS01475 - MFS transporter, at 326,335 to 327,549
_RS01475
AMB_RS01480: AMB_RS01480 - M48 family peptidase, at 327,543 to 328,247
_RS01480
AMB_RS01485: AMB_RS01485 - cobyric acid synthase, at 328,246 to 329,781
_RS01485
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 326.040 kb on + strand, within AMB_RS01470 at 326.370 kb on - strand at 326.435 kb on + strand at 326.435 kb on + strand at 326.435 kb on + strand at 326.436 kb on - strand at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.898 kb on - strand, within AMB_RS01475 at 326.898 kb on - strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.170 kb on + strand, within AMB_RS01475 at 327.170 kb on + strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.278 kb on + strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.296 kb on + strand, within AMB_RS01475 at 327.296 kb on + strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.464 kb on + strand at 327.464 kb on + strand at 327.464 kb on + strand at 327.465 kb on - strand at 327.465 kb on - strand at 327.535 kb on + strand at 327.535 kb on + strand at 327.536 kb on - strand at 327.536 kb on - strand at 327.536 kb on - strand at 327.536 kb on - strand at 327.540 kb on + strand at 327.800 kb on + strand, within AMB_RS01480 at 327.800 kb on + strand, within AMB_RS01480 at 327.800 kb on + strand, within AMB_RS01480 at 328.259 kb on - strand at 328.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 326,040 + AMB_RS01470 0.77 +0.0 326,370 - -3.5 326,435 + -1.9 326,435 + -2.1 326,435 + -0.1 326,436 - +0.3 326,897 + AMB_RS01475 0.46 -0.4 326,897 + AMB_RS01475 0.46 -0.1 326,897 + AMB_RS01475 0.46 -0.3 326,897 + AMB_RS01475 0.46 -1.8 326,898 - AMB_RS01475 0.46 +0.5 326,898 - AMB_RS01475 0.46 +0.2 327,137 + AMB_RS01475 0.66 -0.1 327,137 + AMB_RS01475 0.66 -1.3 327,137 + AMB_RS01475 0.66 +0.0 327,137 + AMB_RS01475 0.66 -1.3 327,137 + AMB_RS01475 0.66 -0.8 327,137 + AMB_RS01475 0.66 +0.3 327,138 - AMB_RS01475 0.66 +0.1 327,138 - AMB_RS01475 0.66 +0.5 327,138 - AMB_RS01475 0.66 -1.1 327,138 - AMB_RS01475 0.66 -0.2 327,138 - AMB_RS01475 0.66 +0.1 327,138 - AMB_RS01475 0.66 +0.1 327,138 - AMB_RS01475 0.66 -0.5 327,138 - AMB_RS01475 0.66 -1.3 327,170 + AMB_RS01475 0.69 -0.1 327,170 + AMB_RS01475 0.69 +0.5 327,171 - AMB_RS01475 0.69 -1.1 327,171 - AMB_RS01475 0.69 -0.1 327,171 - AMB_RS01475 0.69 -1.1 327,278 + AMB_RS01475 0.78 -0.1 327,279 - AMB_RS01475 0.78 -2.3 327,279 - AMB_RS01475 0.78 +0.1 327,279 - AMB_RS01475 0.78 -1.5 327,296 + AMB_RS01475 0.79 -1.8 327,296 + AMB_RS01475 0.79 -0.4 327,297 - AMB_RS01475 0.79 +0.3 327,297 - AMB_RS01475 0.79 +0.2 327,297 - AMB_RS01475 0.79 -0.8 327,297 - AMB_RS01475 0.79 +0.1 327,297 - AMB_RS01475 0.79 +0.4 327,297 - AMB_RS01475 0.79 -0.0 327,357 - AMB_RS01475 0.84 +0.2 327,357 - AMB_RS01475 0.84 -0.8 327,357 - AMB_RS01475 0.84 +0.1 327,357 - AMB_RS01475 0.84 -1.1 327,357 - AMB_RS01475 0.84 +0.1 327,464 + +0.5 327,464 + +0.5 327,464 + +1.5 327,465 - -1.9 327,465 - +0.0 327,535 + -0.2 327,535 + -0.9 327,536 - -0.1 327,536 - -0.0 327,536 - +0.5 327,536 - -0.1 327,540 + -0.1 327,800 + AMB_RS01480 0.36 -0.6 327,800 + AMB_RS01480 0.36 -0.0 327,800 + AMB_RS01480 0.36 -2.4 328,259 - -0.4 328,259 - -0.4
Or see this region's nucleotide sequence