Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01295

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01285 and AMB_RS01290 overlap by 4 nucleotidesAMB_RS01290 and AMB_RS01295 are separated by 5 nucleotidesAMB_RS01295 and AMB_RS01300 overlap by 1 nucleotides AMB_RS01285: AMB_RS01285 - dehydrogenase, at 284,369 to 285,307 _RS01285 AMB_RS01290: AMB_RS01290 - 2-pyrone-4,6-dicarboxylate hydrolase, at 285,304 to 286,221 _RS01290 AMB_RS01295: AMB_RS01295 - gfo/Idh/MocA family oxidoreductase, at 286,227 to 287,189 _RS01295 AMB_RS01300: AMB_RS01300 - aldo/keto reductase, at 287,189 to 288,178 _RS01300 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1at 285.340 kb on + strandat 285.340 kb on + strandat 285.340 kb on + strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.688 kb on - strand, within AMB_RS01290at 285.688 kb on - strand, within AMB_RS01290at 285.772 kb on + strand, within AMB_RS01290at 285.773 kb on - strand, within AMB_RS01290at 285.846 kb on + strand, within AMB_RS01290at 285.846 kb on + strand, within AMB_RS01290at 286.140 kb on + strandat 286.198 kb on + strandat 286.198 kb on + strandat 286.199 kb on - strandat 286.199 kb on - strandat 286.199 kb on - strandat 286.372 kb on - strand, within AMB_RS01295at 286.561 kb on + strand, within AMB_RS01295at 286.562 kb on - strand, within AMB_RS01295at 286.686 kb on + strand, within AMB_RS01295at 286.686 kb on + strand, within AMB_RS01295at 286.687 kb on - strand, within AMB_RS01295at 286.956 kb on + strand, within AMB_RS01295at 286.957 kb on - strand, within AMB_RS01295at 286.957 kb on - strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.990 kb on - strand, within AMB_RS01295at 287.143 kb on - strandat 287.215 kb on + strandat 287.215 kb on + strandat 287.216 kb on - strandat 287.261 kb on + strandat 287.262 kb on - strandat 287.351 kb on + strand, within AMB_RS01300at 287.351 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.541 kb on - strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.892 kb on - strand, within AMB_RS01300at 288.134 kb on + strandat 288.134 kb on + strandat 288.134 kb on + strandat 288.134 kb on + strandat 288.135 kb on - strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.177 kb on - strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.189 kb on - strandat 288.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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285,340 + +0.3
285,340 + -3.1
285,340 + -1.4
285,341 - -1.2
285,341 - -0.6
285,341 - +0.1
285,341 - -0.8
285,448 + AMB_RS01290 0.16 -0.5
285,448 + AMB_RS01290 0.16 -1.6
285,448 + AMB_RS01290 0.16 +0.6
285,448 + AMB_RS01290 0.16 -0.4
285,448 + AMB_RS01290 0.16 +0.6
285,448 + AMB_RS01290 0.16 +0.2
285,448 + AMB_RS01290 0.16 -0.4
285,449 - AMB_RS01290 0.16 +1.6
285,449 - AMB_RS01290 0.16 -1.9
285,449 - AMB_RS01290 0.16 -1.4
285,449 - AMB_RS01290 0.16 +0.1
285,449 - AMB_RS01290 0.16 +0.3
285,449 - AMB_RS01290 0.16 +0.6
285,449 - AMB_RS01290 0.16 -0.0
285,449 - AMB_RS01290 0.16 +0.6
285,687 + AMB_RS01290 0.42 +1.0
285,687 + AMB_RS01290 0.42 -2.2
285,687 + AMB_RS01290 0.42 +0.6
285,688 - AMB_RS01290 0.42 -0.0
285,688 - AMB_RS01290 0.42 -3.4
285,772 + AMB_RS01290 0.51 -0.8
285,773 - AMB_RS01290 0.51 +0.6
285,846 + AMB_RS01290 0.59 +0.5
285,846 + AMB_RS01290 0.59 -1.3
286,140 + +0.6
286,198 + -0.4
286,198 + -2.0
286,199 - -0.3
286,199 - -3.0
286,199 - -0.1
286,372 - AMB_RS01295 0.15 -0.2
286,561 + AMB_RS01295 0.35 +0.4
286,562 - AMB_RS01295 0.35 -1.0
286,686 + AMB_RS01295 0.48 -0.8
286,686 + AMB_RS01295 0.48 -1.4
286,687 - AMB_RS01295 0.48 -1.8
286,956 + AMB_RS01295 0.76 -1.0
286,957 - AMB_RS01295 0.76 -0.6
286,957 - AMB_RS01295 0.76 -1.0
286,977 + AMB_RS01295 0.78 +0.6
286,977 + AMB_RS01295 0.78 -1.8
286,977 + AMB_RS01295 0.78 -0.8
286,977 + AMB_RS01295 0.78 -1.5
286,977 + AMB_RS01295 0.78 +0.2
286,977 + AMB_RS01295 0.78 +1.6
286,978 - AMB_RS01295 0.78 -1.8
286,978 - AMB_RS01295 0.78 -3.6
286,978 - AMB_RS01295 0.78 -2.7
286,978 - AMB_RS01295 0.78 +0.5
286,978 - AMB_RS01295 0.78 -1.8
286,978 - AMB_RS01295 0.78 +0.6
286,978 - AMB_RS01295 0.78 +0.6
286,978 - AMB_RS01295 0.78 +0.4
286,978 - AMB_RS01295 0.78 -0.1
286,978 - AMB_RS01295 0.78 -0.3
286,990 - AMB_RS01295 0.79 +0.1
287,143 - -0.3
287,215 + -0.1
287,215 + -0.4
287,216 - -1.7
287,261 + +0.2
287,262 - +1.6
287,351 + AMB_RS01300 0.16 +0.1
287,351 + AMB_RS01300 0.16 +0.4
287,540 + AMB_RS01300 0.35 +0.1
287,540 + AMB_RS01300 0.35 +0.3
287,540 + AMB_RS01300 0.35 -0.0
287,540 + AMB_RS01300 0.35 -0.0
287,540 + AMB_RS01300 0.35 +0.3
287,540 + AMB_RS01300 0.35 +0.4
287,540 + AMB_RS01300 0.35 +0.6
287,540 + AMB_RS01300 0.35 -1.0
287,540 + AMB_RS01300 0.35 -1.0
287,540 + AMB_RS01300 0.35 +0.4
287,540 + AMB_RS01300 0.35 -1.4
287,540 + AMB_RS01300 0.35 +0.6
287,541 - AMB_RS01300 0.36 -0.8
287,543 + AMB_RS01300 0.36 -0.1
287,543 + AMB_RS01300 0.36 -1.4
287,543 + AMB_RS01300 0.36 +0.1
287,543 + AMB_RS01300 0.36 -0.0
287,543 + AMB_RS01300 0.36 -0.5
287,543 + AMB_RS01300 0.36 +0.0
287,543 + AMB_RS01300 0.36 -0.8
287,543 + AMB_RS01300 0.36 +0.5
287,543 + AMB_RS01300 0.36 +0.1
287,543 + AMB_RS01300 0.36 -0.0
287,543 + AMB_RS01300 0.36 -0.4
287,544 - AMB_RS01300 0.36 -2.0
287,544 - AMB_RS01300 0.36 -0.0
287,544 - AMB_RS01300 0.36 +0.0
287,709 - AMB_RS01300 0.53 -1.6
287,709 - AMB_RS01300 0.53 +0.7
287,709 - AMB_RS01300 0.53 -0.5
287,891 + AMB_RS01300 0.71 -0.2
287,891 + AMB_RS01300 0.71 -1.2
287,891 + AMB_RS01300 0.71 +1.4
287,891 + AMB_RS01300 0.71 -1.8
287,891 + AMB_RS01300 0.71 +0.1
287,891 + AMB_RS01300 0.71 -0.0
287,891 + AMB_RS01300 0.71 -0.4
287,892 - AMB_RS01300 0.71 -1.6
288,134 + -1.8
288,134 + +0.4
288,134 + +0.8
288,134 + +0.1
288,135 - -0.1
288,176 + -1.0
288,176 + -1.9
288,176 + -0.8
288,176 + +1.1
288,177 - -0.9
288,188 + +0.1
288,188 + -0.5
288,188 + +0.7
288,188 + +0.5
288,188 + +1.6
288,189 - -0.5
288,189 - -0.4

Or see this region's nucleotide sequence