Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00860

Experiment: 30_an_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00855 and AMB_RS00860 are separated by 31 nucleotidesAMB_RS00860 and AMB_RS00865 overlap by 4 nucleotides AMB_RS00855: AMB_RS00855 - helix-turn-helix domain-containing protein, at 191,240 to 192,112 _RS00855 AMB_RS00860: AMB_RS00860 - NADH-quinone oxidoreductase subunit F, at 192,144 to 193,736 _RS00860 AMB_RS00865: AMB_RS00865 - formate dehydrogenase subunit alpha, at 193,733 to 196,408 _RS00865 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1at 191.364 kb on - strand, within AMB_RS00855at 191.407 kb on + strand, within AMB_RS00855at 191.408 kb on - strand, within AMB_RS00855at 191.438 kb on - strand, within AMB_RS00855at 191.546 kb on + strand, within AMB_RS00855at 191.546 kb on + strand, within AMB_RS00855at 191.547 kb on - strand, within AMB_RS00855at 191.547 kb on - strand, within AMB_RS00855at 191.547 kb on - strand, within AMB_RS00855at 191.911 kb on + strand, within AMB_RS00855at 191.912 kb on - strand, within AMB_RS00855at 191.912 kb on - strand, within AMB_RS00855at 192.133 kb on + strandat 192.300 kb on + strandat 192.301 kb on - strandat 192.301 kb on - strandat 192.376 kb on - strand, within AMB_RS00860at 192.376 kb on - strand, within AMB_RS00860at 192.376 kb on - strand, within AMB_RS00860at 192.613 kb on - strand, within AMB_RS00860at 192.613 kb on - strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.927 kb on + strand, within AMB_RS00860at 192.928 kb on - strand, within AMB_RS00860at 192.942 kb on + strand, within AMB_RS00860at 192.957 kb on - strand, within AMB_RS00860at 192.957 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.148 kb on + strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.245 kb on + strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 194.414 kb on + strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.717 kb on + strand, within AMB_RS00865at 194.717 kb on + strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
remove
191,364 - AMB_RS00855 0.14 +0.3
191,407 + AMB_RS00855 0.19 -0.0
191,408 - AMB_RS00855 0.19 -1.9
191,438 - AMB_RS00855 0.23 +0.5
191,546 + AMB_RS00855 0.35 +0.3
191,546 + AMB_RS00855 0.35 +0.7
191,547 - AMB_RS00855 0.35 +0.6
191,547 - AMB_RS00855 0.35 +0.7
191,547 - AMB_RS00855 0.35 +0.3
191,911 + AMB_RS00855 0.77 -1.2
191,912 - AMB_RS00855 0.77 +0.6
191,912 - AMB_RS00855 0.77 +0.2
192,133 + +0.2
192,300 + -0.8
192,301 - -0.3
192,301 - -0.4
192,376 - AMB_RS00860 0.15 +0.3
192,376 - AMB_RS00860 0.15 -2.1
192,376 - AMB_RS00860 0.15 -0.4
192,613 - AMB_RS00860 0.29 -0.4
192,613 - AMB_RS00860 0.29 -1.4
192,921 + AMB_RS00860 0.49 -2.0
192,921 + AMB_RS00860 0.49 +0.4
192,921 + AMB_RS00860 0.49 +0.0
192,921 + AMB_RS00860 0.49 -0.3
192,921 + AMB_RS00860 0.49 -2.1
192,921 + AMB_RS00860 0.49 +1.0
192,921 + AMB_RS00860 0.49 +0.2
192,922 - AMB_RS00860 0.49 -3.5
192,922 - AMB_RS00860 0.49 -0.0
192,922 - AMB_RS00860 0.49 +0.4
192,922 - AMB_RS00860 0.49 -0.4
192,927 + AMB_RS00860 0.49 -1.0
192,928 - AMB_RS00860 0.49 -1.4
192,942 + AMB_RS00860 0.50 +0.0
192,957 - AMB_RS00860 0.51 +1.6
192,957 - AMB_RS00860 0.51 +0.6
193,030 - AMB_RS00860 0.56 +0.1
193,030 - AMB_RS00860 0.56 -0.0
193,030 - AMB_RS00860 0.56 +1.6
193,030 - AMB_RS00860 0.56 +0.4
193,030 - AMB_RS00860 0.56 -1.4
193,104 + AMB_RS00860 0.60 +0.2
193,104 + AMB_RS00860 0.60 -1.6
193,104 + AMB_RS00860 0.60 +0.1
193,105 - AMB_RS00860 0.60 -0.4
193,105 - AMB_RS00860 0.60 +0.2
193,105 - AMB_RS00860 0.60 +0.1
193,148 + AMB_RS00860 0.63 -2.2
193,149 - AMB_RS00860 0.63 +0.6
193,149 - AMB_RS00860 0.63 -2.2
193,149 - AMB_RS00860 0.63 +1.2
193,149 - AMB_RS00860 0.63 -1.4
193,245 + AMB_RS00860 0.69 -0.4
193,246 - AMB_RS00860 0.69 +1.6
193,246 - AMB_RS00860 0.69 -1.0
193,246 - AMB_RS00860 0.69 +0.6
193,246 - AMB_RS00860 0.69 -1.0
194,414 + AMB_RS00865 0.25 +0.7
194,415 - AMB_RS00865 0.25 -1.6
194,415 - AMB_RS00865 0.25 +0.1
194,415 - AMB_RS00865 0.25 +0.5
194,717 + AMB_RS00865 0.37 +0.2
194,717 + AMB_RS00865 0.37 -0.0
194,718 - AMB_RS00865 0.37 -0.0
194,718 - AMB_RS00865 0.37 -0.1
194,718 - AMB_RS00865 0.37 +0.1
194,718 - AMB_RS00865 0.37 -2.7

Or see this region's nucleotide sequence