Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00045

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00030 and AMB_RS00035 are separated by 0 nucleotidesAMB_RS00035 and AMB_RS00040 are separated by 190 nucleotidesAMB_RS00040 and AMB_RS00045 are separated by 189 nucleotidesAMB_RS00045 and AMB_RS00050 are separated by 8 nucleotidesAMB_RS00050 and AMB_RS00055 are separated by 11 nucleotidesAMB_RS00055 and AMB_RS00060 are separated by 2 nucleotides AMB_RS00030: AMB_RS00030 - hypothetical protein, at 5,762 to 6,118 _RS00030 AMB_RS00035: AMB_RS00035 - hypothetical protein, at 6,119 to 6,610 _RS00035 AMB_RS00040: AMB_RS00040 - tRNA-Gly, at 6,801 to 6,875 _RS00040 AMB_RS00045: AMB_RS00045 - thioredoxin, at 7,065 to 7,997 _RS00045 AMB_RS00050: AMB_RS00050 - ATP-dependent protease, at 8,006 to 8,665 _RS00050 AMB_RS00055: AMB_RS00055 - hypothetical protein, at 8,677 to 8,874 _RS00055 AMB_RS00060: AMB_RS00060 - DUF971 domain-containing protein, at 8,877 to 9,326 _RS00060 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 6.066 kb on - strand, within AMB_RS00030at 6.152 kb on + strandat 6.152 kb on + strandat 6.228 kb on - strand, within AMB_RS00035at 6.257 kb on + strand, within AMB_RS00035at 6.485 kb on + strand, within AMB_RS00035at 6.486 kb on - strand, within AMB_RS00035at 6.486 kb on - strand, within AMB_RS00035at 6.488 kb on + strand, within AMB_RS00035at 6.488 kb on + strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.629 kb on - strandat 6.776 kb on - strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.036 kb on - strandat 7.485 kb on + strand, within AMB_RS00045at 7.485 kb on + strand, within AMB_RS00045at 7.485 kb on + strand, within AMB_RS00045at 7.485 kb on + strand, within AMB_RS00045at 7.485 kb on + strand, within AMB_RS00045at 7.486 kb on - strand, within AMB_RS00045at 7.486 kb on - strand, within AMB_RS00045at 7.486 kb on - strand, within AMB_RS00045at 7.818 kb on + strand, within AMB_RS00045at 7.818 kb on + strand, within AMB_RS00045at 7.995 kb on + strandat 8.126 kb on + strand, within AMB_RS00050at 8.127 kb on - strand, within AMB_RS00050at 8.164 kb on + strand, within AMB_RS00050at 8.165 kb on - strand, within AMB_RS00050at 8.165 kb on - strand, within AMB_RS00050at 8.165 kb on - strand, within AMB_RS00050at 8.225 kb on + strand, within AMB_RS00050at 8.226 kb on - strand, within AMB_RS00050at 8.226 kb on - strand, within AMB_RS00050at 8.282 kb on + strand, within AMB_RS00050at 8.369 kb on + strand, within AMB_RS00050at 8.369 kb on + strand, within AMB_RS00050at 8.370 kb on - strand, within AMB_RS00050at 8.370 kb on - strand, within AMB_RS00050at 8.450 kb on + strand, within AMB_RS00050at 8.451 kb on - strand, within AMB_RS00050at 8.663 kb on + strandat 8.663 kb on + strandat 8.664 kb on - strandat 8.664 kb on - strandat 8.664 kb on - strandat 8.664 kb on - strandat 8.664 kb on - strandat 8.664 kb on - strandat 8.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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6,066 - AMB_RS00030 0.85 -0.4
6,152 + -0.0
6,152 + -0.4
6,228 - AMB_RS00035 0.22 -1.0
6,257 + AMB_RS00035 0.28 +0.0
6,485 + AMB_RS00035 0.74 -0.2
6,486 - AMB_RS00035 0.75 +0.1
6,486 - AMB_RS00035 0.75 -0.2
6,488 + AMB_RS00035 0.75 -0.1
6,488 + AMB_RS00035 0.75 +0.1
6,489 - AMB_RS00035 0.75 +0.2
6,489 - AMB_RS00035 0.75 +1.6
6,489 - AMB_RS00035 0.75 +0.4
6,629 - +0.0
6,776 - +0.1
7,024 + -1.9
7,024 + +0.6
7,024 + +0.2
7,024 + +0.6
7,025 - -0.2
7,025 - -0.3
7,025 - -0.8
7,025 - +0.3
7,025 - +0.5
7,025 - +0.6
7,036 - +0.6
7,485 + AMB_RS00045 0.45 -0.1
7,485 + AMB_RS00045 0.45 -0.7
7,485 + AMB_RS00045 0.45 -0.9
7,485 + AMB_RS00045 0.45 -0.3
7,485 + AMB_RS00045 0.45 -0.0
7,486 - AMB_RS00045 0.45 -1.0
7,486 - AMB_RS00045 0.45 -0.7
7,486 - AMB_RS00045 0.45 -0.3
7,818 + AMB_RS00045 0.81 +1.6
7,818 + AMB_RS00045 0.81 -0.5
7,995 + -0.8
8,126 + AMB_RS00050 0.18 -0.7
8,127 - AMB_RS00050 0.18 -3.1
8,164 + AMB_RS00050 0.24 -1.8
8,165 - AMB_RS00050 0.24 -0.8
8,165 - AMB_RS00050 0.24 -1.6
8,165 - AMB_RS00050 0.24 -0.8
8,225 + AMB_RS00050 0.33 -0.3
8,226 - AMB_RS00050 0.33 +1.1
8,226 - AMB_RS00050 0.33 -2.3
8,282 + AMB_RS00050 0.42 -0.8
8,369 + AMB_RS00050 0.55 -1.0
8,369 + AMB_RS00050 0.55 +1.4
8,370 - AMB_RS00050 0.55 -2.1
8,370 - AMB_RS00050 0.55 +0.1
8,450 + AMB_RS00050 0.67 +1.6
8,451 - AMB_RS00050 0.67 -2.3
8,663 + -1.0
8,663 + -0.3
8,664 - +0.2
8,664 - -0.1
8,664 - -3.5
8,664 - -2.6
8,664 - -2.5
8,664 - -2.4
8,664 - -0.9

Or see this region's nucleotide sequence