Strain Fitness in Escherichia coli BW25113 around b4444
Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,973,147 | + | aas | b2836 | 0.59 | +0.6 |
2,973,200 | - | aas | b2836 | 0.61 | +3.3 |
2,973,253 | + | aas | b2836 | 0.64 | +0.0 |
2,973,261 | - | aas | b2836 | 0.64 | +0.9 |
2,973,261 | - | aas | b2836 | 0.64 | +0.3 |
2,973,351 | + | aas | b2836 | 0.68 | +1.2 |
2,973,351 | + | aas | b2836 | 0.68 | +0.7 |
2,973,354 | - | aas | b2836 | 0.68 | -1.7 |
2,973,354 | - | aas | b2836 | 0.68 | +0.3 |
2,973,526 | - | aas | b2836 | 0.76 | -0.7 |
2,973,540 | - | aas | b2836 | 0.77 | +2.4 |
2,973,699 | - | aas | b2836 | 0.84 | +0.2 |
2,973,741 | + | aas | b2836 | 0.86 | +0.4 |
2,973,754 | + | aas | b2836 | 0.87 | -0.3 |
2,973,831 | - | +1.2 | |||
2,973,831 | - | +0.5 | |||
2,973,842 | - | -1.5 | |||
2,973,894 | - | +0.1 | |||
2,973,916 | + | +0.5 | |||
2,973,918 | + | +1.6 | |||
2,973,974 | - | +0.6 | |||
2,973,995 | + | +0.5 | |||
2,974,053 | - | +1.0 | |||
2,974,055 | + | -0.3 | |||
2,974,055 | + | +0.3 | |||
2,974,090 | + | +1.0 | |||
2,974,090 | + | -0.7 | |||
2,974,097 | - | +0.3 | |||
2,974,148 | + | rygA | b4444 | 0.27 | -1.5 |
2,974,161 | - | rygA | b4444 | 0.42 | +0.3 |
2,974,163 | - | rygA | b4444 | 0.44 | +2.8 |
2,974,163 | - | rygA | b4444 | 0.44 | -1.3 |
2,974,168 | - | rygA | b4444 | 0.50 | +1.2 |
2,974,174 | - | rygA | b4444 | 0.57 | +0.7 |
2,974,183 | - | rygA | b4444 | 0.67 | +0.8 |
2,974,340 | + | omrB | b4445 | 0.17 | +0.7 |
2,974,353 | - | omrB | b4445 | 0.33 | +0.3 |
2,974,363 | - | omrB | b4445 | 0.45 | +0.1 |
2,974,381 | - | omrB | b4445 | 0.67 | -0.3 |
2,974,429 | - | +0.6 | |||
2,974,581 | - | -0.7 | |||
2,974,635 | + | +0.9 | |||
2,974,635 | + | +1.7 | |||
2,974,636 | - | -1.7 | |||
2,974,636 | - | -0.5 | |||
2,974,684 | + | +1.3 | |||
2,974,684 | + | +0.8 | |||
2,974,723 | + | +1.8 | |||
2,974,733 | + | galR | b2837 | 0.11 | -0.3 |
2,974,733 | + | galR | b2837 | 0.11 | -0.7 |
2,974,741 | - | galR | b2837 | 0.12 | -0.4 |
2,974,741 | - | galR | b2837 | 0.12 | -0.3 |
2,974,751 | + | galR | b2837 | 0.13 | +0.3 |
2,974,793 | + | galR | b2837 | 0.17 | +0.7 |
2,974,793 | + | galR | b2837 | 0.17 | -0.8 |
2,975,062 | - | galR | b2837 | 0.43 | +0.0 |
2,975,089 | + | galR | b2837 | 0.45 | -1.7 |
2,975,111 | - | galR | b2837 | 0.47 | -0.2 |
2,975,111 | - | galR | b2837 | 0.47 | +1.2 |
2,975,152 | - | galR | b2837 | 0.51 | +1.0 |
2,975,168 | + | galR | b2837 | 0.53 | -0.3 |
2,975,176 | - | galR | b2837 | 0.54 | +0.7 |
Or see this region's nucleotide sequence