Strain Fitness in Escherichia coli BW25113 around b4277
Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,498,304 | + | yjgX | b4575 | 0.57 | +0.7 |
4,498,319 | - | yjgX | b4575 | 0.59 | +0.6 |
4,498,362 | + | yjgX | b4575 | 0.62 | -0.0 |
4,498,365 | - | yjgX | b4575 | 0.62 | -0.4 |
4,498,388 | - | yjgX | b4575 | 0.64 | -1.0 |
4,498,395 | - | yjgX | b4575 | 0.65 | +2.4 |
4,498,401 | - | yjgX | b4575 | 0.65 | +0.6 |
4,498,403 | + | yjgX | b4575 | 0.66 | +0.1 |
4,498,403 | + | yjgX | b4575 | 0.66 | -2.3 |
4,498,406 | - | yjgX | b4575 | 0.66 | +0.4 |
4,498,406 | - | yjgX | b4575 | 0.66 | +0.5 |
4,498,409 | - | yjgX | b4575 | 0.66 | +0.3 |
4,498,471 | - | yjgX | b4575 | 0.71 | -1.0 |
4,498,473 | + | yjgX | b4575 | 0.71 | +0.4 |
4,498,483 | + | yjgX | b4575 | 0.72 | +1.4 |
4,498,491 | - | yjgX | b4575 | 0.73 | +0.6 |
4,498,491 | - | yjgX | b4575 | 0.73 | +2.0 |
4,498,491 | - | yjgX | b4575 | 0.73 | +1.2 |
4,498,491 | - | yjgX | b4575 | 0.73 | +0.1 |
4,498,491 | - | yjgX | b4575 | 0.73 | -0.5 |
4,498,503 | - | yjgX | b4575 | 0.74 | -1.0 |
4,498,575 | + | yjgX | b4575 | 0.80 | +0.4 |
4,498,588 | + | yjgX | b4575 | 0.81 | -1.3 |
4,498,593 | - | yjgX | b4575 | 0.81 | -1.0 |
4,498,600 | + | yjgX | b4575 | 0.82 | +0.5 |
4,498,600 | + | yjgX | b4575 | 0.82 | +0.6 |
4,498,633 | + | yjgX | b4575 | 0.85 | -0.8 |
4,498,633 | + | yjgX | b4575 | 0.85 | +1.5 |
4,498,648 | - | yjgX | b4575 | 0.86 | +0.4 |
4,498,681 | - | yjgX | b4575 | 0.89 | -2.7 |
4,498,717 | - | +0.9 | |||
4,498,855 | + | +2.3 | |||
4,498,973 | - | +0.9 | |||
4,498,993 | - | +0.2 | |||
4,499,122 | + | +2.4 | |||
4,499,122 | + | -1.4 | |||
4,499,230 | + | +0.1 | |||
4,499,238 | - | -0.4 | |||
4,499,279 | - | -2.5 | |||
4,499,290 | + | +2.0 | |||
4,499,290 | + | +0.0 | |||
4,499,309 | - | +0.4 | |||
4,499,385 | - | yjgZ | b4277 | 0.31 | -0.2 |
4,499,387 | + | yjgZ | b4277 | 0.32 | +1.6 |
4,499,408 | - | yjgZ | b4277 | 0.38 | +0.8 |
4,499,451 | + | yjgZ | b4277 | 0.51 | -0.4 |
4,499,466 | - | yjgZ | b4277 | 0.55 | +2.2 |
4,499,486 | - | yjgZ | b4277 | 0.62 | +2.2 |
4,499,503 | + | yjgZ | b4277 | 0.67 | +0.9 |
4,499,552 | - | yjgZ | b4277 | 0.82 | -0.5 |
4,499,584 | - | +0.0 | |||
4,499,612 | + | -1.2 | |||
4,499,612 | + | +0.9 | |||
4,499,641 | - | -2.4 | |||
4,499,721 | - | +1.6 | |||
4,499,735 | - | -0.7 | |||
4,499,735 | - | +0.0 | |||
4,499,752 | - | +0.0 | |||
4,499,752 | - | +0.2 | |||
4,499,770 | + | +1.4 | |||
4,499,770 | + | +0.4 | |||
4,499,783 | + | -0.4 | |||
4,499,793 | + | +1.4 | |||
4,499,799 | + | +2.0 | |||
4,499,834 | + | -2.0 | |||
4,499,834 | + | -1.8 | |||
4,499,845 | + | +0.6 | |||
4,499,845 | + | +0.8 | |||
4,499,901 | + | +0.2 | |||
4,499,901 | + | +1.0 | |||
4,499,906 | + | -0.2 | |||
4,499,948 | - | +0.4 | |||
4,499,948 | - | -0.2 | |||
4,499,954 | + | -3.0 | |||
4,499,980 | - | +1.5 | |||
4,499,999 | + | -1.2 | |||
4,499,999 | + | -0.1 | |||
4,500,007 | - | +0.4 | |||
4,500,055 | - | +0.7 | |||
4,500,084 | + | +0.0 | |||
4,500,174 | - | +0.2 | |||
4,500,185 | - | -0.2 | |||
4,500,196 | - | -0.0 | |||
4,500,196 | - | +1.7 | |||
4,500,309 | + | insG | b4278 | 0.14 | -1.0 |
4,500,464 | + | insG | b4278 | 0.25 | -0.1 |
4,500,477 | - | insG | b4278 | 0.26 | +1.0 |
4,500,480 | - | insG | b4278 | 0.27 | +1.2 |
4,500,524 | + | insG | b4278 | 0.30 | +0.8 |
4,500,529 | + | insG | b4278 | 0.30 | -0.3 |
4,500,532 | + | insG | b4278 | 0.31 | -1.6 |
4,500,534 | + | insG | b4278 | 0.31 | +1.0 |
4,500,540 | - | insG | b4278 | 0.31 | +0.4 |
Or see this region's nucleotide sequence