Strain Fitness in Escherichia coli BW25113 around b3250
Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,395,897 | - | yhdE | b3248 | 0.15 | -1.1 |
3,395,897 | - | yhdE | b3248 | 0.15 | +0.9 |
3,395,923 | + | yhdE | b3248 | 0.20 | -1.7 |
3,395,923 | + | yhdE | b3248 | 0.20 | -3.3 |
3,395,941 | + | yhdE | b3248 | 0.23 | -2.4 |
3,395,956 | - | yhdE | b3248 | 0.25 | +1.6 |
3,395,964 | - | yhdE | b3248 | 0.26 | +2.5 |
3,395,966 | + | yhdE | b3248 | 0.27 | -2.1 |
3,395,987 | - | yhdE | b3248 | 0.30 | -1.6 |
3,395,987 | - | yhdE | b3248 | 0.30 | +1.7 |
3,396,058 | - | yhdE | b3248 | 0.42 | +2.4 |
3,396,117 | - | yhdE | b3248 | 0.52 | +4.4 |
3,396,139 | + | yhdE | b3248 | 0.56 | -2.8 |
3,396,166 | - | yhdE | b3248 | 0.60 | -0.1 |
3,396,166 | - | yhdE | b3248 | 0.60 | +0.9 |
3,396,176 | - | yhdE | b3248 | 0.62 | +1.4 |
3,396,186 | - | yhdE | b3248 | 0.64 | +1.8 |
3,396,192 | + | yhdE | b3248 | 0.65 | -1.7 |
3,396,231 | + | yhdE | b3248 | 0.71 | -0.7 |
3,396,231 | + | yhdE | b3248 | 0.71 | -0.1 |
3,396,256 | + | yhdE | b3248 | 0.76 | -2.9 |
3,396,267 | + | yhdE | b3248 | 0.77 | -2.6 |
3,396,269 | + | yhdE | b3248 | 0.78 | -2.4 |
3,396,275 | - | yhdE | b3248 | 0.79 | +1.4 |
3,396,275 | - | yhdE | b3248 | 0.79 | +1.5 |
3,396,287 | - | yhdE | b3248 | 0.81 | +0.4 |
3,396,287 | - | yhdE | b3248 | 0.81 | +4.6 |
3,396,307 | - | yhdE | b3248 | 0.84 | +1.9 |
3,396,317 | - | yhdE | b3248 | 0.86 | +1.5 |
3,396,333 | - | yhdE | b3248 | 0.89 | +2.1 |
3,396,344 | - | +1.0 | |||
3,396,344 | - | +1.8 | |||
3,396,364 | - | +0.4 | |||
3,396,364 | - | -0.1 | |||
3,396,417 | - | +0.6 | |||
3,396,924 | - | +3.0 | |||
3,396,924 | - | +2.5 | |||
3,396,934 | - | +2.3 | |||
3,396,962 | - | +2.4 | |||
3,397,084 | - | mreC | b3250 | 0.17 | +0.4 |
3,397,174 | - | mreC | b3250 | 0.25 | -2.1 |
3,397,973 | - | -1.6 | |||
3,397,974 | - | +0.0 | |||
3,397,991 | - | +1.2 | |||
3,398,003 | - | +0.7 | |||
3,398,031 | - | +1.6 | |||
3,398,032 | - | +0.7 |
Or see this region's nucleotide sequence