Strain Fitness in Escherichia coli BW25113 around b2936

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttktA and yggG are separated by 277 nucleotidesyggG and speB are separated by 205 nucleotides b2935: tktA - transketolase 1, thiamin-binding (NCBI), at 3,077,666 to 3,079,657 tktA b2936: yggG - orf, hypothetical protein (VIMSS), at 3,079,935 to 3,080,693 yggG b2937: speB - agmatinase (NCBI), at 3,080,899 to 3,081,819 speB Position (kb) 3079 3080 3081Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3079.066 kb on - strand, within tktAat 3079.341 kb on - strand, within tktAat 3079.494 kb on + strandat 3079.549 kb on - strandat 3079.762 kb on + strandat 3079.812 kb on - strandat 3079.870 kb on + strandat 3079.977 kb on + strandat 3079.985 kb on - strandat 3080.005 kb on + strandat 3080.126 kb on + strand, within yggGat 3080.177 kb on + strand, within yggGat 3080.197 kb on - strand, within yggGat 3080.220 kb on - strand, within yggGat 3080.220 kb on - strand, within yggGat 3080.246 kb on + strand, within yggGat 3080.275 kb on + strand, within yggGat 3080.302 kb on - strand, within yggGat 3080.340 kb on + strand, within yggGat 3080.348 kb on - strand, within yggGat 3080.540 kb on + strand, within yggGat 3080.553 kb on - strand, within yggGat 3080.626 kb on - strandat 3080.683 kb on + strandat 3080.683 kb on + strandat 3080.691 kb on - strandat 3080.691 kb on - strandat 3080.954 kb on + strandat 3080.954 kb on + strandat 3081.056 kb on - strand, within speBat 3081.056 kb on - strand, within speBat 3081.158 kb on + strand, within speBat 3081.193 kb on - strand, within speBat 3081.216 kb on - strand, within speBat 3081.216 kb on - strand, within speBat 3081.263 kb on + strand, within speBat 3081.269 kb on - strand, within speBat 3081.292 kb on + strand, within speBat 3081.312 kb on + strand, within speBat 3081.314 kb on + strand, within speBat 3081.314 kb on + strand, within speBat 3081.314 kb on + strand, within speBat 3081.322 kb on - strand, within speBat 3081.322 kb on - strand, within speBat 3081.322 kb on - strand, within speBat 3081.322 kb on - strand, within speBat 3081.322 kb on - strand, within speBat 3081.347 kb on - strand, within speBat 3081.347 kb on - strand, within speBat 3081.421 kb on + strand, within speBat 3081.421 kb on + strand, within speBat 3081.450 kb on + strand, within speBat 3081.450 kb on + strand, within speBat 3081.540 kb on - strand, within speBat 3081.619 kb on + strand, within speBat 3081.648 kb on + strand, within speBat 3081.648 kb on + strand, within speBat 3081.675 kb on - strand, within speBat 3081.675 kb on - strand, within speB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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3,079,066 - tktA b2935 0.70 -1.0
3,079,341 - tktA b2935 0.84 -1.0
3,079,494 + -1.2
3,079,549 - -0.2
3,079,762 + -1.5
3,079,812 - -0.2
3,079,870 + +0.8
3,079,977 + +1.4
3,079,985 - +0.0
3,080,005 + +0.0
3,080,126 + yggG b2936 0.25 -0.7
3,080,177 + yggG b2936 0.32 -0.4
3,080,197 - yggG b2936 0.35 +0.9
3,080,220 - yggG b2936 0.38 +0.7
3,080,220 - yggG b2936 0.38 +0.4
3,080,246 + yggG b2936 0.41 -2.0
3,080,275 + yggG b2936 0.45 -0.9
3,080,302 - yggG b2936 0.48 +0.5
3,080,340 + yggG b2936 0.53 -0.1
3,080,348 - yggG b2936 0.54 -0.5
3,080,540 + yggG b2936 0.80 -1.0
3,080,553 - yggG b2936 0.81 -0.0
3,080,626 - -1.0
3,080,683 + +1.4
3,080,683 + -0.6
3,080,691 - -0.2
3,080,691 - +3.0
3,080,954 + -1.0
3,080,954 + -2.6
3,081,056 - speB b2937 0.17 -2.1
3,081,056 - speB b2937 0.17 -1.0
3,081,158 + speB b2937 0.28 -2.3
3,081,193 - speB b2937 0.32 -2.9
3,081,216 - speB b2937 0.34 -1.4
3,081,216 - speB b2937 0.34 -0.6
3,081,263 + speB b2937 0.40 -1.4
3,081,269 - speB b2937 0.40 +0.4
3,081,292 + speB b2937 0.43 -1.4
3,081,312 + speB b2937 0.45 -2.6
3,081,314 + speB b2937 0.45 -3.9
3,081,314 + speB b2937 0.45 -0.6
3,081,314 + speB b2937 0.45 -1.6
3,081,322 - speB b2937 0.46 -1.0
3,081,322 - speB b2937 0.46 -1.4
3,081,322 - speB b2937 0.46 -1.0
3,081,322 - speB b2937 0.46 -2.0
3,081,322 - speB b2937 0.46 -1.0
3,081,347 - speB b2937 0.49 +0.4
3,081,347 - speB b2937 0.49 -1.2
3,081,421 + speB b2937 0.57 -2.3
3,081,421 + speB b2937 0.57 -1.8
3,081,450 + speB b2937 0.60 -0.2
3,081,450 + speB b2937 0.60 -1.4
3,081,540 - speB b2937 0.70 -0.6
3,081,619 + speB b2937 0.78 -1.4
3,081,648 + speB b2937 0.81 -2.4
3,081,648 + speB b2937 0.81 -3.3
3,081,675 - speB b2937 0.84 -0.2
3,081,675 - speB b2937 0.84 -1.2

Or see this region's nucleotide sequence