Strain Fitness in Escherichia coli BW25113 around b2733

Experiment: Bacitracin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfhlA and ygbA are separated by 36 nucleotidesygbA and mutS are separated by 286 nucleotidesmutS and pphB are separated by 105 nucleotidespphB and ygbI are separated by 50 nucleotides b2731: fhlA - DNA-binding transcriptional activator (NCBI), at 2,852,360 to 2,854,438 fhlA b2732: ygbA - hypothetical protein (NCBI), at 2,854,475 to 2,854,828 ygbA b2733: mutS - DNA mismatch repair protein (NCBI), at 2,855,115 to 2,857,676 mutS b2734: pphB - serine/threonine-specific protein phosphatase 2 (NCBI), at 2,857,782 to 2,858,438 pphB b2735: ygbI - predicted DNA-binding transcriptional regulator (RefSeq), at 2,858,489 to 2,859,256 ygbI Position (kb) 2855 2856 2857 2858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2854.115 kb on + strand, within fhlAat 2854.129 kb on - strand, within fhlAat 2854.131 kb on + strand, within fhlAat 2854.192 kb on - strand, within fhlAat 2854.260 kb on + strandat 2854.282 kb on - strandat 2854.529 kb on - strand, within ygbAat 2854.552 kb on + strand, within ygbAat 2854.586 kb on - strand, within ygbAat 2854.622 kb on - strand, within ygbAat 2854.652 kb on - strand, within ygbAat 2854.652 kb on - strand, within ygbAat 2854.984 kb on + strandat 2854.984 kb on + strandat 2855.167 kb on - strandat 2855.314 kb on + strandat 2855.314 kb on + strandat 2855.723 kb on - strand, within mutSat 2855.747 kb on + strand, within mutSat 2855.821 kb on - strand, within mutSat 2855.821 kb on - strand, within mutSat 2855.858 kb on + strand, within mutSat 2856.007 kb on - strand, within mutSat 2856.077 kb on + strand, within mutSat 2856.077 kb on + strand, within mutSat 2856.135 kb on + strand, within mutSat 2856.135 kb on + strand, within mutSat 2856.226 kb on + strand, within mutSat 2856.257 kb on + strand, within mutSat 2856.257 kb on + strand, within mutSat 2856.279 kb on - strand, within mutSat 2856.353 kb on - strand, within mutSat 2856.353 kb on - strand, within mutSat 2856.448 kb on + strand, within mutSat 2856.448 kb on + strand, within mutSat 2856.468 kb on - strand, within mutSat 2856.547 kb on + strand, within mutSat 2856.547 kb on + strand, within mutSat 2856.580 kb on - strand, within mutSat 2856.611 kb on + strand, within mutSat 2856.611 kb on + strand, within mutSat 2856.612 kb on + strand, within mutSat 2856.612 kb on + strand, within mutSat 2856.619 kb on + strand, within mutSat 2856.636 kb on + strand, within mutSat 2856.666 kb on - strand, within mutSat 2856.666 kb on - strand, within mutSat 2856.697 kb on + strand, within mutSat 2856.706 kb on + strand, within mutSat 2856.706 kb on + strand, within mutSat 2856.746 kb on + strand, within mutSat 2856.746 kb on - strand, within mutSat 2856.746 kb on - strand, within mutSat 2856.799 kb on + strand, within mutSat 2856.799 kb on + strand, within mutSat 2856.804 kb on + strand, within mutSat 2856.812 kb on - strand, within mutSat 2856.817 kb on - strand, within mutSat 2856.986 kb on + strand, within mutSat 2856.999 kb on - strand, within mutSat 2857.001 kb on + strand, within mutSat 2857.021 kb on - strand, within mutSat 2857.089 kb on - strand, within mutSat 2857.308 kb on - strand, within mutSat 2857.378 kb on - strand, within mutSat 2857.378 kb on - strand, within mutSat 2857.408 kb on - strand, within mutSat 2857.408 kb on - strand, within mutSat 2857.453 kb on - strandat 2857.453 kb on - strandat 2857.512 kb on + strandat 2857.543 kb on + strandat 2857.566 kb on + strandat 2857.570 kb on - strandat 2857.575 kb on - strandat 2857.577 kb on + strandat 2857.591 kb on - strandat 2857.617 kb on + strandat 2857.621 kb on + strandat 2857.621 kb on + strandat 2857.621 kb on + strandat 2857.621 kb on + strandat 2857.621 kb on + strandat 2857.631 kb on + strandat 2857.649 kb on + strandat 2857.665 kb on + strandat 2857.665 kb on + strandat 2857.719 kb on + strandat 2857.743 kb on + strandat 2857.743 kb on + strandat 2857.747 kb on + strandat 2857.780 kb on - strandat 2857.784 kb on + strandat 2857.785 kb on - strandat 2857.786 kb on + strandat 2857.786 kb on + strandat 2857.787 kb on + strandat 2857.788 kb on + strandat 2857.794 kb on - strandat 2857.795 kb on - strandat 2857.829 kb on + strandat 2857.829 kb on + strandat 2857.838 kb on - strandat 2857.868 kb on + strand, within pphBat 2857.877 kb on - strand, within pphBat 2857.877 kb on - strand, within pphBat 2857.942 kb on + strand, within pphBat 2857.950 kb on - strand, within pphBat 2857.953 kb on - strand, within pphBat 2857.955 kb on - strand, within pphBat 2857.957 kb on + strand, within pphBat 2857.960 kb on - strand, within pphBat 2857.961 kb on - strand, within pphBat 2857.965 kb on + strand, within pphBat 2857.965 kb on - strand, within pphBat 2857.965 kb on - strand, within pphBat 2857.965 kb on - strand, within pphBat 2857.965 kb on - strand, within pphBat 2857.973 kb on - strand, within pphBat 2857.973 kb on - strand, within pphBat 2857.993 kb on - strand, within pphBat 2857.993 kb on - strand, within pphBat 2858.008 kb on - strand, within pphBat 2858.026 kb on + strand, within pphBat 2858.056 kb on + strand, within pphBat 2858.067 kb on + strand, within pphBat 2858.069 kb on + strand, within pphBat 2858.146 kb on + strand, within pphBat 2858.146 kb on + strand, within pphBat 2858.210 kb on + strand, within pphBat 2858.261 kb on - strand, within pphBat 2858.275 kb on - strand, within pphBat 2858.397 kb on - strandat 2858.405 kb on + strandat 2858.457 kb on + strandat 2858.457 kb on - strandat 2858.466 kb on - strandat 2858.471 kb on - strandat 2858.471 kb on - strandat 2858.473 kb on - strandat 2858.476 kb on - strandat 2858.514 kb on + strandat 2858.518 kb on + strandat 2858.568 kb on + strand, within ygbIat 2858.568 kb on + strand, within ygbIat 2858.618 kb on - strand, within ygbI

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
remove
2,854,115 + fhlA b2731 0.84 +0.5
2,854,129 - fhlA b2731 0.85 -0.1
2,854,131 + fhlA b2731 0.85 -0.3
2,854,192 - fhlA b2731 0.88 +2.3
2,854,260 + +0.3
2,854,282 - -1.4
2,854,529 - ygbA b2732 0.15 +2.1
2,854,552 + ygbA b2732 0.22 +0.8
2,854,586 - ygbA b2732 0.31 -0.5
2,854,622 - ygbA b2732 0.42 -1.0
2,854,652 - ygbA b2732 0.50 +0.9
2,854,652 - ygbA b2732 0.50 +0.5
2,854,984 + +0.3
2,854,984 + -1.7
2,855,167 - +0.0
2,855,314 + -1.8
2,855,314 + -2.3
2,855,723 - mutS b2733 0.24 +1.0
2,855,747 + mutS b2733 0.25 +0.3
2,855,821 - mutS b2733 0.28 +1.8
2,855,821 - mutS b2733 0.28 +1.7
2,855,858 + mutS b2733 0.29 -1.0
2,856,007 - mutS b2733 0.35 +2.1
2,856,077 + mutS b2733 0.38 -0.4
2,856,077 + mutS b2733 0.38 -0.5
2,856,135 + mutS b2733 0.40 +0.7
2,856,135 + mutS b2733 0.40 +0.3
2,856,226 + mutS b2733 0.43 +0.3
2,856,257 + mutS b2733 0.45 -1.0
2,856,257 + mutS b2733 0.45 -0.7
2,856,279 - mutS b2733 0.45 +0.0
2,856,353 - mutS b2733 0.48 +0.2
2,856,353 - mutS b2733 0.48 -0.7
2,856,448 + mutS b2733 0.52 -0.3
2,856,448 + mutS b2733 0.52 +0.0
2,856,468 - mutS b2733 0.53 -0.3
2,856,547 + mutS b2733 0.56 -1.5
2,856,547 + mutS b2733 0.56 -1.5
2,856,580 - mutS b2733 0.57 -0.4
2,856,611 + mutS b2733 0.58 +1.0
2,856,611 + mutS b2733 0.58 +0.5
2,856,612 + mutS b2733 0.58 +0.8
2,856,612 + mutS b2733 0.58 +0.0
2,856,619 + mutS b2733 0.59 +0.7
2,856,636 + mutS b2733 0.59 -0.4
2,856,666 - mutS b2733 0.61 -0.3
2,856,666 - mutS b2733 0.61 +4.1
2,856,697 + mutS b2733 0.62 -0.4
2,856,706 + mutS b2733 0.62 -1.3
2,856,706 + mutS b2733 0.62 +1.3
2,856,746 + mutS b2733 0.64 -1.5
2,856,746 - mutS b2733 0.64 +3.9
2,856,746 - mutS b2733 0.64 +0.3
2,856,799 + mutS b2733 0.66 +0.3
2,856,799 + mutS b2733 0.66 +1.0
2,856,804 + mutS b2733 0.66 +0.5
2,856,812 - mutS b2733 0.66 -1.0
2,856,817 - mutS b2733 0.66 +1.9
2,856,986 + mutS b2733 0.73 +0.3
2,856,999 - mutS b2733 0.74 +0.5
2,857,001 + mutS b2733 0.74 +4.6
2,857,021 - mutS b2733 0.74 +0.0
2,857,089 - mutS b2733 0.77 +0.6
2,857,308 - mutS b2733 0.86 -1.7
2,857,378 - mutS b2733 0.88 -1.4
2,857,378 - mutS b2733 0.88 +3.7
2,857,408 - mutS b2733 0.90 -0.9
2,857,408 - mutS b2733 0.90 -1.4
2,857,453 - -0.3
2,857,453 - -0.7
2,857,512 + +0.6
2,857,543 + -1.5
2,857,566 + +0.3
2,857,570 - -1.4
2,857,575 - +0.0
2,857,577 + +0.9
2,857,591 - +0.2
2,857,617 + -1.0
2,857,621 + -0.4
2,857,621 + +0.8
2,857,621 + -0.7
2,857,621 + +0.1
2,857,621 + +0.2
2,857,631 + +0.3
2,857,649 + -1.1
2,857,665 + -0.5
2,857,665 + -3.1
2,857,719 + -0.5
2,857,743 + +0.1
2,857,743 + +0.3
2,857,747 + +0.5
2,857,780 - +0.4
2,857,784 + -0.3
2,857,785 - -0.0
2,857,786 + -0.3
2,857,786 + -0.4
2,857,787 + -1.3
2,857,788 + +0.5
2,857,794 - +0.1
2,857,795 - -0.7
2,857,829 + -1.0
2,857,829 + -1.8
2,857,838 - -1.3
2,857,868 + pphB b2734 0.13 -0.4
2,857,877 - pphB b2734 0.14 +1.5
2,857,877 - pphB b2734 0.14 +0.7
2,857,942 + pphB b2734 0.24 -2.3
2,857,950 - pphB b2734 0.26 +0.4
2,857,953 - pphB b2734 0.26 -0.5
2,857,955 - pphB b2734 0.26 +0.7
2,857,957 + pphB b2734 0.27 +2.6
2,857,960 - pphB b2734 0.27 +0.7
2,857,961 - pphB b2734 0.27 -0.7
2,857,965 + pphB b2734 0.28 -1.3
2,857,965 - pphB b2734 0.28 +2.1
2,857,965 - pphB b2734 0.28 -0.1
2,857,965 - pphB b2734 0.28 -2.0
2,857,965 - pphB b2734 0.28 -0.7
2,857,973 - pphB b2734 0.29 +0.0
2,857,973 - pphB b2734 0.29 -0.7
2,857,993 - pphB b2734 0.32 -1.0
2,857,993 - pphB b2734 0.32 +1.7
2,858,008 - pphB b2734 0.34 -0.9
2,858,026 + pphB b2734 0.37 +0.6
2,858,056 + pphB b2734 0.42 +0.7
2,858,067 + pphB b2734 0.43 +0.8
2,858,069 + pphB b2734 0.44 -1.1
2,858,146 + pphB b2734 0.55 +0.1
2,858,146 + pphB b2734 0.55 -0.4
2,858,210 + pphB b2734 0.65 -0.5
2,858,261 - pphB b2734 0.73 +1.1
2,858,275 - pphB b2734 0.75 -0.7
2,858,397 - +0.3
2,858,405 + +0.3
2,858,457 + -1.5
2,858,457 - +0.2
2,858,466 - -1.5
2,858,471 - -0.7
2,858,471 - +0.1
2,858,473 - +0.5
2,858,476 - +0.8
2,858,514 + +0.2
2,858,518 + -1.5
2,858,568 + ygbI b2735 0.10 -0.4
2,858,568 + ygbI b2735 0.10 +1.2
2,858,618 - ygbI b2735 0.17 -0.7

Or see this region's nucleotide sequence