Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_855

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_854 and PfGW456L13_855 are separated by 463 nucleotidesPfGW456L13_855 and PfGW456L13_856 are separated by 138 nucleotides PfGW456L13_854 - Argininosuccinate lyase (EC 4.3.2.1), at 959,828 to 961,222 _854 PfGW456L13_855 - Autolysis response regulater LytR, at 961,686 to 962,432 _855 PfGW456L13_856 - Porphobilinogen deaminase (EC 2.5.1.61), at 962,571 to 963,512 _856 Position (kb) 961 962 963Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 961.117 kb on - strandat 961.235 kb on - strandat 961.247 kb on + strandat 961.247 kb on + strandat 961.248 kb on - strandat 961.248 kb on - strandat 961.248 kb on - strandat 961.277 kb on + strandat 961.277 kb on + strandat 961.277 kb on + strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.314 kb on + strandat 961.314 kb on + strandat 961.315 kb on - strandat 961.315 kb on - strandat 961.378 kb on - strandat 961.378 kb on - strandat 961.414 kb on + strandat 961.414 kb on + strandat 961.414 kb on + strandat 961.415 kb on - strandat 961.427 kb on + strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.484 kb on + strandat 961.484 kb on + strandat 961.484 kb on + strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.492 kb on - strandat 961.605 kb on + strandat 961.605 kb on + strandat 961.605 kb on + strandat 961.606 kb on - strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.644 kb on - strandat 961.644 kb on - strandat 961.649 kb on - strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.686 kb on - strandat 961.686 kb on - strandat 961.761 kb on + strand, within PfGW456L13_855at 961.761 kb on + strand, within PfGW456L13_855at 961.761 kb on + strand, within PfGW456L13_855at 961.762 kb on - strand, within PfGW456L13_855at 961.762 kb on - strand, within PfGW456L13_855at 961.778 kb on + strand, within PfGW456L13_855at 961.779 kb on - strand, within PfGW456L13_855at 961.779 kb on - strand, within PfGW456L13_855at 961.833 kb on - strand, within PfGW456L13_855at 961.961 kb on - strand, within PfGW456L13_855at 961.980 kb on + strand, within PfGW456L13_855at 961.980 kb on + strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.023 kb on + strand, within PfGW456L13_855at 962.024 kb on - strand, within PfGW456L13_855at 962.108 kb on + strand, within PfGW456L13_855at 962.108 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.164 kb on - strand, within PfGW456L13_855at 962.164 kb on - strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.273 kb on + strand, within PfGW456L13_855at 962.273 kb on + strand, within PfGW456L13_855at 962.273 kb on + strand, within PfGW456L13_855at 962.274 kb on - strand, within PfGW456L13_855at 962.274 kb on - strand, within PfGW456L13_855at 962.274 kb on - strand, within PfGW456L13_855at 962.306 kb on + strand, within PfGW456L13_855at 962.407 kb on + strandat 962.430 kb on + strandat 962.496 kb on - strandat 962.496 kb on - strandat 962.496 kb on - strandat 962.498 kb on + strandat 962.498 kb on + strandat 962.506 kb on - strandat 962.528 kb on + strandat 962.528 kb on + strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.529 kb on - strandat 962.535 kb on + strandat 962.536 kb on - strandat 962.536 kb on - strandat 962.536 kb on - strandat 962.547 kb on + strandat 962.547 kb on + strandat 962.547 kb on + strandat 962.547 kb on + strandat 962.547 kb on + strandat 962.547 kb on + strandat 962.551 kb on + strandat 962.558 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
961,117 - -2.5
961,235 - -1.3
961,247 + -2.2
961,247 + -3.1
961,248 - -0.2
961,248 - -0.8
961,248 - +0.9
961,277 + -3.5
961,277 + -3.4
961,277 + -3.7
961,278 - -2.3
961,278 - -2.9
961,278 - +0.1
961,278 - +1.3
961,278 - -2.7
961,278 - +0.4
961,314 + +0.1
961,314 + +0.3
961,315 - +0.7
961,315 - +1.3
961,378 - -1.1
961,378 - -0.2
961,414 + +1.9
961,414 + +1.3
961,414 + +0.9
961,415 - +0.6
961,427 + -1.5
961,428 - -0.2
961,428 - -2.2
961,428 - +1.2
961,428 - +1.8
961,428 - +1.2
961,462 + -1.6
961,462 + -0.6
961,462 + -2.7
961,462 + -1.9
961,462 + -1.5
961,462 + -1.9
961,462 + -2.5
961,462 + +0.3
961,462 + -3.7
961,463 - +2.2
961,463 - +0.6
961,463 - +0.8
961,463 - -2.0
961,463 - -0.3
961,464 + -1.6
961,464 + -1.8
961,464 + -1.9
961,464 + -1.2
961,464 + -0.3
961,465 - -0.4
961,465 - -1.8
961,465 - -2.1
961,465 - +0.6
961,465 - -1.0
961,484 + +2.0
961,484 + -0.8
961,484 + +2.2
961,485 - +1.6
961,485 - -0.4
961,485 - +0.1
961,485 - -2.4
961,485 - +1.0
961,485 - -0.6
961,485 - +0.0
961,492 - +1.4
961,605 + -2.7
961,605 + -0.6
961,605 + -1.7
961,606 - -0.6
961,643 + -1.7
961,643 + +1.6
961,643 + -0.5
961,643 + -2.1
961,643 + +1.1
961,644 - +0.6
961,644 - -2.5
961,649 - +1.3
961,685 + -0.2
961,685 + -2.4
961,685 + -2.2
961,685 + -0.3
961,686 - -0.9
961,686 - -3.6
961,761 + PfGW456L13_855 0.10 +0.4
961,761 + PfGW456L13_855 0.10 +0.9
961,761 + PfGW456L13_855 0.10 +1.1
961,762 - PfGW456L13_855 0.10 -1.9
961,762 - PfGW456L13_855 0.10 -2.5
961,778 + PfGW456L13_855 0.12 +0.3
961,779 - PfGW456L13_855 0.12 -3.1
961,779 - PfGW456L13_855 0.12 +2.1
961,833 - PfGW456L13_855 0.20 +1.1
961,961 - PfGW456L13_855 0.37 -0.0
961,980 + PfGW456L13_855 0.39 -0.9
961,980 + PfGW456L13_855 0.39 -2.2
961,981 - PfGW456L13_855 0.39 +0.7
961,981 - PfGW456L13_855 0.39 -0.3
961,981 - PfGW456L13_855 0.39 +1.0
962,011 + PfGW456L13_855 0.44 +1.8
962,011 + PfGW456L13_855 0.44 -2.5
962,011 + PfGW456L13_855 0.44 +2.6
962,011 + PfGW456L13_855 0.44 -2.1
962,011 + PfGW456L13_855 0.44 +3.8
962,011 + PfGW456L13_855 0.44 -1.1
962,011 + PfGW456L13_855 0.44 +1.0
962,011 + PfGW456L13_855 0.44 +2.9
962,011 + PfGW456L13_855 0.44 +0.1
962,011 + PfGW456L13_855 0.44 -1.4
962,011 + PfGW456L13_855 0.44 -0.4
962,012 - PfGW456L13_855 0.44 -2.7
962,012 - PfGW456L13_855 0.44 +0.7
962,012 - PfGW456L13_855 0.44 +0.4
962,012 - PfGW456L13_855 0.44 -0.9
962,012 - PfGW456L13_855 0.44 -0.5
962,012 - PfGW456L13_855 0.44 -0.5
962,012 - PfGW456L13_855 0.44 +1.9
962,012 - PfGW456L13_855 0.44 -0.1
962,012 - PfGW456L13_855 0.44 +0.3
962,023 + PfGW456L13_855 0.45 +0.2
962,024 - PfGW456L13_855 0.45 -0.7
962,108 + PfGW456L13_855 0.56 +2.6
962,108 + PfGW456L13_855 0.56 +1.0
962,163 + PfGW456L13_855 0.64 -0.5
962,163 + PfGW456L13_855 0.64 +1.6
962,163 + PfGW456L13_855 0.64 +2.8
962,163 + PfGW456L13_855 0.64 -2.1
962,163 + PfGW456L13_855 0.64 +1.3
962,163 + PfGW456L13_855 0.64 +0.6
962,163 + PfGW456L13_855 0.64 +0.8
962,163 + PfGW456L13_855 0.64 +0.9
962,163 + PfGW456L13_855 0.64 -2.9
962,163 + PfGW456L13_855 0.64 -0.2
962,164 - PfGW456L13_855 0.64 -0.2
962,164 - PfGW456L13_855 0.64 +0.1
962,184 + PfGW456L13_855 0.67 +1.6
962,184 + PfGW456L13_855 0.67 -1.4
962,184 + PfGW456L13_855 0.67 +0.3
962,184 + PfGW456L13_855 0.67 +1.4
962,184 + PfGW456L13_855 0.67 +1.1
962,184 + PfGW456L13_855 0.67 +1.7
962,185 - PfGW456L13_855 0.67 +0.8
962,185 - PfGW456L13_855 0.67 -0.2
962,185 - PfGW456L13_855 0.67 -3.8
962,185 - PfGW456L13_855 0.67 -1.3
962,185 - PfGW456L13_855 0.67 +0.6
962,185 - PfGW456L13_855 0.67 +1.4
962,185 - PfGW456L13_855 0.67 +0.8
962,185 - PfGW456L13_855 0.67 +0.8
962,185 - PfGW456L13_855 0.67 +2.0
962,185 - PfGW456L13_855 0.67 -3.0
962,185 - PfGW456L13_855 0.67 +2.2
962,185 - PfGW456L13_855 0.67 -0.4
962,185 - PfGW456L13_855 0.67 -0.8
962,185 - PfGW456L13_855 0.67 -3.3
962,185 - PfGW456L13_855 0.67 +0.7
962,185 - PfGW456L13_855 0.67 +0.2
962,273 + PfGW456L13_855 0.79 -3.5
962,273 + PfGW456L13_855 0.79 +1.1
962,273 + PfGW456L13_855 0.79 -1.7
962,274 - PfGW456L13_855 0.79 -1.9
962,274 - PfGW456L13_855 0.79 -0.1
962,274 - PfGW456L13_855 0.79 -1.5
962,306 + PfGW456L13_855 0.83 +0.2
962,407 + -0.5
962,430 + +1.8
962,496 - -0.2
962,496 - -2.1
962,496 - -2.2
962,498 + -2.5
962,498 + -2.8
962,506 - -0.7
962,528 + +3.7
962,528 + +0.2
962,529 - +0.5
962,529 - -2.8
962,529 - -0.4
962,529 - +0.4
962,529 - +0.7
962,529 - +2.4
962,529 - +1.1
962,535 + -0.0
962,536 - +0.7
962,536 - +1.1
962,536 - +1.2
962,547 + +0.5
962,547 + -1.2
962,547 + -3.2
962,547 + +0.9
962,547 + +2.0
962,547 + +1.0
962,551 + +0.2
962,558 + -0.7

Or see this region's nucleotide sequence