Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_797

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_794 and PfGW456L13_795 are separated by 24 nucleotidesPfGW456L13_795 and PfGW456L13_796 are separated by 101 nucleotidesPfGW456L13_796 and PfGW456L13_797 are separated by 5 nucleotidesPfGW456L13_797 and PfGW456L13_798 are separated by 135 nucleotidesPfGW456L13_798 and PfGW456L13_799 are separated by 124 nucleotides PfGW456L13_794 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 894,959 to 896,356 _794 PfGW456L13_795 - hypothetical protein, at 896,381 to 896,500 _795 PfGW456L13_796 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 896,602 to 897,057 _796 PfGW456L13_797 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 897,063 to 898,271 _797 PfGW456L13_798 - DNA repair protein RadC, at 898,407 to 899,081 _798 PfGW456L13_799 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 899,206 to 900,792 _799 Position (kb) 897 898 899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 896.063 kb on + strand, within PfGW456L13_794at 896.064 kb on - strand, within PfGW456L13_794at 896.064 kb on - strand, within PfGW456L13_794at 896.064 kb on - strand, within PfGW456L13_794at 896.076 kb on + strand, within PfGW456L13_794at 896.076 kb on + strand, within PfGW456L13_794at 896.077 kb on - strand, within PfGW456L13_794at 896.077 kb on - strand, within PfGW456L13_794at 896.077 kb on - strand, within PfGW456L13_794at 896.077 kb on - strand, within PfGW456L13_794at 896.077 kb on - strand, within PfGW456L13_794at 896.079 kb on + strand, within PfGW456L13_794at 896.079 kb on + strand, within PfGW456L13_794at 896.080 kb on - strand, within PfGW456L13_794at 896.080 kb on - strand, within PfGW456L13_794at 896.080 kb on - strand, within PfGW456L13_794at 896.080 kb on - strand, within PfGW456L13_794at 896.431 kb on + strand, within PfGW456L13_795at 896.432 kb on - strand, within PfGW456L13_795at 896.527 kb on + strandat 896.527 kb on + strandat 896.527 kb on + strandat 896.528 kb on - strandat 897.065 kb on - strandat 897.065 kb on - strandat 898.300 kb on + strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.301 kb on - strandat 898.353 kb on - strandat 898.353 kb on - strandat 898.353 kb on - strandat 898.353 kb on - strandat 898.358 kb on - strandat 898.406 kb on + strandat 898.406 kb on + strandat 898.406 kb on + strandat 898.406 kb on + strandat 898.406 kb on + strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.407 kb on - strandat 898.412 kb on + strandat 898.412 kb on + strandat 898.412 kb on + strandat 898.413 kb on - strandat 898.413 kb on - strandat 898.413 kb on - strandat 898.413 kb on - strandat 898.413 kb on - strandat 898.507 kb on + strand, within PfGW456L13_798at 898.527 kb on - strand, within PfGW456L13_798at 898.527 kb on - strand, within PfGW456L13_798at 898.537 kb on + strand, within PfGW456L13_798at 898.537 kb on + strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.538 kb on - strand, within PfGW456L13_798at 898.703 kb on + strand, within PfGW456L13_798at 898.703 kb on + strand, within PfGW456L13_798at 898.703 kb on + strand, within PfGW456L13_798at 898.704 kb on - strand, within PfGW456L13_798at 898.704 kb on - strand, within PfGW456L13_798at 898.704 kb on - strand, within PfGW456L13_798at 898.704 kb on - strand, within PfGW456L13_798at 898.741 kb on - strand, within PfGW456L13_798at 899.067 kb on + strandat 899.093 kb on + strandat 899.093 kb on + strandat 899.093 kb on + strandat 899.093 kb on + strandat 899.093 kb on + strandat 899.094 kb on - strandat 899.189 kb on + strandat 899.189 kb on + strandat 899.190 kb on - strandat 899.207 kb on + strandat 899.207 kb on + strandat 899.207 kb on + strandat 899.208 kb on - strandat 899.208 kb on - strandat 899.228 kb on + strandat 899.229 kb on - strandat 899.229 kb on - strandat 899.229 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
896,063 + PfGW456L13_794 0.79 +1.4
896,064 - PfGW456L13_794 0.79 +0.0
896,064 - PfGW456L13_794 0.79 -0.6
896,064 - PfGW456L13_794 0.79 +0.8
896,076 + PfGW456L13_794 0.80 -2.1
896,076 + PfGW456L13_794 0.80 +0.8
896,077 - PfGW456L13_794 0.80 -1.3
896,077 - PfGW456L13_794 0.80 -2.0
896,077 - PfGW456L13_794 0.80 +0.4
896,077 - PfGW456L13_794 0.80 +0.0
896,077 - PfGW456L13_794 0.80 -2.7
896,079 + PfGW456L13_794 0.80 +1.7
896,079 + PfGW456L13_794 0.80 -2.1
896,080 - PfGW456L13_794 0.80 -2.3
896,080 - PfGW456L13_794 0.80 -1.8
896,080 - PfGW456L13_794 0.80 -3.5
896,080 - PfGW456L13_794 0.80 -3.0
896,431 + PfGW456L13_795 0.42 -2.2
896,432 - PfGW456L13_795 0.42 -2.8
896,527 + -1.5
896,527 + -2.6
896,527 + -1.2
896,528 - +0.3
897,065 - +2.6
897,065 - -0.3
898,300 + -0.1
898,301 - +0.4
898,301 - -2.0
898,301 - +1.2
898,301 - -2.1
898,301 - +2.0
898,301 - -0.7
898,301 - +1.7
898,301 - +1.9
898,301 - +0.7
898,301 - +0.5
898,301 - -2.1
898,301 - -0.3
898,301 - +0.7
898,301 - +1.1
898,301 - +0.3
898,301 - -4.0
898,301 - -1.8
898,301 - -2.6
898,353 - -0.5
898,353 - -2.8
898,353 - -1.5
898,353 - +1.0
898,358 - +1.1
898,406 + -3.4
898,406 + +0.9
898,406 + +1.9
898,406 + -1.7
898,406 + +0.4
898,407 - -1.0
898,407 - -1.6
898,407 - +0.4
898,407 - -2.0
898,407 - +0.4
898,407 - +0.4
898,407 - -2.9
898,407 - -1.2
898,407 - -3.0
898,407 - +1.4
898,412 + +4.4
898,412 + +1.6
898,412 + +1.1
898,413 - -2.5
898,413 - -1.8
898,413 - +0.4
898,413 - -1.1
898,413 - -1.9
898,507 + PfGW456L13_798 0.15 +0.4
898,527 - PfGW456L13_798 0.18 -2.2
898,527 - PfGW456L13_798 0.18 +1.0
898,537 + PfGW456L13_798 0.19 -2.1
898,537 + PfGW456L13_798 0.19 -2.8
898,538 - PfGW456L13_798 0.19 +1.1
898,538 - PfGW456L13_798 0.19 -0.4
898,538 - PfGW456L13_798 0.19 +0.2
898,538 - PfGW456L13_798 0.19 +1.3
898,538 - PfGW456L13_798 0.19 +0.1
898,538 - PfGW456L13_798 0.19 -0.1
898,703 + PfGW456L13_798 0.44 +0.5
898,703 + PfGW456L13_798 0.44 -0.7
898,703 + PfGW456L13_798 0.44 -1.3
898,704 - PfGW456L13_798 0.44 +1.3
898,704 - PfGW456L13_798 0.44 -3.5
898,704 - PfGW456L13_798 0.44 -0.7
898,704 - PfGW456L13_798 0.44 +0.3
898,741 - PfGW456L13_798 0.49 -2.1
899,067 + +0.3
899,093 + -1.7
899,093 + +1.8
899,093 + +1.2
899,093 + +3.2
899,093 + +0.3
899,094 - -1.2
899,189 + +1.9
899,189 + -1.5
899,190 - -1.1
899,207 + +1.8
899,207 + +1.9
899,207 + -1.3
899,208 - -2.0
899,208 - -0.5
899,228 + -1.2
899,229 - +1.3
899,229 - -1.6
899,229 - -2.9

Or see this region's nucleotide sequence