Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5010 and PfGW456L13_5011 are separated by 7 nucleotides PfGW456L13_5011 and PfGW456L13_5012 are separated by 43 nucleotides PfGW456L13_5012 and PfGW456L13_5013 overlap by 1 nucleotides PfGW456L13_5013 and PfGW456L13_5014 are separated by 270 nucleotides
PfGW456L13_5010 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 5,586,443 to 5,586,967
_5010
PfGW456L13_5011 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 5,586,975 to 5,587,547
_5011
PfGW456L13_5012 - LptA, protein essential for LPS transport across the periplasm, at 5,587,591 to 5,588,082
_5012
PfGW456L13_5013 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 5,588,082 to 5,588,807
_5013
PfGW456L13_5014 - RNA polymerase sigma-54 factor RpoN, at 5,589,078 to 5,590,547
_5014
Position (kb) 5587
5588
5589 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5586.974 kb on + strand at 5586.974 kb on + strand at 5586.974 kb on + strand at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.522 kb on + strand at 5587.522 kb on + strand at 5588.805 kb on + strand at 5588.806 kb on - strand at 5588.806 kb on - strand at 5588.806 kb on - strand at 5588.920 kb on + strand at 5588.920 kb on + strand at 5588.920 kb on + strand at 5588.921 kb on - strand at 5588.921 kb on - strand at 5588.921 kb on - strand at 5588.921 kb on - strand at 5588.922 kb on + strand at 5588.922 kb on + strand at 5588.930 kb on + strand at 5588.931 kb on - strand at 5588.931 kb on - strand at 5588.931 kb on - strand at 5588.937 kb on - strand at 5588.946 kb on + strand at 5588.971 kb on + strand at 5589.034 kb on + strand at 5589.034 kb on + strand at 5589.035 kb on - strand at 5589.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,586,974 + -2.6 5,586,974 + -1.7 5,586,974 + +0.7 5,587,413 + PfGW456L13_5011 0.76 -2.6 5,587,413 + PfGW456L13_5011 0.76 -3.0 5,587,413 + PfGW456L13_5011 0.76 -1.3 5,587,413 + PfGW456L13_5011 0.76 -2.2 5,587,522 + -3.1 5,587,522 + +0.2 5,588,805 + -0.0 5,588,806 - +1.0 5,588,806 - -1.2 5,588,806 - -1.8 5,588,920 + +0.2 5,588,920 + -1.5 5,588,920 + +1.2 5,588,921 - +0.8 5,588,921 - -0.3 5,588,921 - +0.2 5,588,921 - -2.4 5,588,922 + +1.0 5,588,922 + -1.2 5,588,930 + +1.1 5,588,931 - -2.4 5,588,931 - +1.3 5,588,931 - -3.6 5,588,937 - +1.1 5,588,946 + +0.1 5,588,971 + -3.6 5,589,034 + -0.3 5,589,034 + +1.0 5,589,035 - -0.8 5,589,042 + -0.3
Or see this region's nucleotide sequence