Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2875

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2874 and PfGW456L13_2875 are separated by 286 nucleotidesPfGW456L13_2875 and PfGW456L13_2876 are separated by 154 nucleotides PfGW456L13_2874 - D-beta-hydroxybutyrate permease, at 3,200,430 to 3,201,821 _2874 PfGW456L13_2875 - Sigma-54 dependent transcriptional regulator, at 3,202,108 to 3,203,523 _2875 PfGW456L13_2876 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 3,203,678 to 3,205,255 _2876 Position (kb) 3202 3203 3204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3201.187 kb on + strand, within PfGW456L13_2874at 3201.452 kb on - strand, within PfGW456L13_2874at 3201.491 kb on - strand, within PfGW456L13_2874at 3201.491 kb on - strand, within PfGW456L13_2874at 3201.569 kb on + strand, within PfGW456L13_2874at 3201.637 kb on + strand, within PfGW456L13_2874at 3201.637 kb on + strand, within PfGW456L13_2874at 3201.638 kb on - strand, within PfGW456L13_2874at 3201.638 kb on - strand, within PfGW456L13_2874at 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.030 kb on + strandat 3202.031 kb on - strandat 3202.031 kb on - strandat 3202.031 kb on - strandat 3202.031 kb on - strandat 3202.031 kb on - strandat 3202.031 kb on - strandat 3202.038 kb on + strandat 3202.038 kb on + strandat 3202.038 kb on + strandat 3202.039 kb on - strandat 3202.039 kb on - strandat 3202.050 kb on + strandat 3202.051 kb on - strandat 3202.051 kb on - strandat 3202.055 kb on + strandat 3202.056 kb on - strandat 3202.056 kb on - strandat 3202.110 kb on - strandat 3202.148 kb on + strandat 3202.148 kb on + strandat 3202.148 kb on + strandat 3202.149 kb on - strandat 3202.316 kb on - strand, within PfGW456L13_2875at 3202.323 kb on + strand, within PfGW456L13_2875at 3202.323 kb on + strand, within PfGW456L13_2875at 3202.324 kb on - strand, within PfGW456L13_2875at 3202.574 kb on + strand, within PfGW456L13_2875at 3202.574 kb on + strand, within PfGW456L13_2875at 3202.574 kb on + strand, within PfGW456L13_2875at 3202.574 kb on + strand, within PfGW456L13_2875at 3202.574 kb on + strand, within PfGW456L13_2875at 3202.575 kb on - strand, within PfGW456L13_2875at 3202.575 kb on - strand, within PfGW456L13_2875at 3202.575 kb on - strand, within PfGW456L13_2875at 3202.575 kb on - strand, within PfGW456L13_2875at 3202.624 kb on - strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.127 kb on + strandat 3203.127 kb on + strandat 3203.127 kb on + strandat 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.129 kb on + strand, within PfGW456L13_2875at 3203.129 kb on + strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.381 kb on + strand, within PfGW456L13_2875at 3203.381 kb on + strand, within PfGW456L13_2875at 3203.495 kb on + strandat 3203.495 kb on + strandat 3203.495 kb on + strandat 3203.496 kb on - strandat 3203.544 kb on + strandat 3203.545 kb on - strandat 3203.545 kb on - strandat 3203.668 kb on - strandat 3203.679 kb on + strandat 3203.679 kb on + strandat 3203.679 kb on + strandat 3203.680 kb on - strandat 3203.680 kb on - strandat 3203.708 kb on + strandat 3203.708 kb on + strandat 3203.708 kb on + strandat 3203.709 kb on - strandat 3203.709 kb on - strandat 3203.721 kb on + strandat 3203.721 kb on + strandat 3203.721 kb on + strandat 3203.722 kb on - strandat 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.848 kb on - strand, within PfGW456L13_2876at 3203.848 kb on - strand, within PfGW456L13_2876at 3203.983 kb on + strand, within PfGW456L13_2876at 3203.984 kb on - strand, within PfGW456L13_2876at 3203.984 kb on - strand, within PfGW456L13_2876at 3204.209 kb on + strand, within PfGW456L13_2876at 3204.210 kb on - strand, within PfGW456L13_2876at 3204.210 kb on - strand, within PfGW456L13_2876at 3204.331 kb on + strand, within PfGW456L13_2876at 3204.356 kb on - strand, within PfGW456L13_2876at 3204.356 kb on - strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.453 kb on - strand, within PfGW456L13_2876at 3204.453 kb on - strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.510 kb on - strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,201,187 + PfGW456L13_2874 0.54 +1.3
3,201,452 - PfGW456L13_2874 0.73 +1.3
3,201,491 - PfGW456L13_2874 0.76 -0.5
3,201,491 - PfGW456L13_2874 0.76 +0.3
3,201,569 + PfGW456L13_2874 0.82 +1.2
3,201,637 + PfGW456L13_2874 0.87 +1.0
3,201,637 + PfGW456L13_2874 0.87 -1.7
3,201,638 - PfGW456L13_2874 0.87 +1.1
3,201,638 - PfGW456L13_2874 0.87 +0.7
3,202,030 + +0.3
3,202,030 + +0.2
3,202,030 + +0.6
3,202,030 + +0.8
3,202,030 + +0.7
3,202,030 + +0.6
3,202,030 + +0.2
3,202,031 - -1.3
3,202,031 - -1.8
3,202,031 - -2.5
3,202,031 - +1.5
3,202,031 - -0.9
3,202,031 - -4.3
3,202,038 + -2.9
3,202,038 + +0.2
3,202,038 + -1.8
3,202,039 - +2.9
3,202,039 - +1.4
3,202,050 + -0.3
3,202,051 - +0.6
3,202,051 - +0.2
3,202,055 + -0.4
3,202,056 - +1.7
3,202,056 - +0.8
3,202,110 - +0.8
3,202,148 + -2.8
3,202,148 + -1.2
3,202,148 + +2.6
3,202,149 - +0.9
3,202,316 - PfGW456L13_2875 0.15 +0.7
3,202,323 + PfGW456L13_2875 0.15 -4.3
3,202,323 + PfGW456L13_2875 0.15 -0.7
3,202,324 - PfGW456L13_2875 0.15 -3.4
3,202,574 + PfGW456L13_2875 0.33 +0.9
3,202,574 + PfGW456L13_2875 0.33 +1.2
3,202,574 + PfGW456L13_2875 0.33 +1.9
3,202,574 + PfGW456L13_2875 0.33 +0.2
3,202,574 + PfGW456L13_2875 0.33 +0.1
3,202,575 - PfGW456L13_2875 0.33 +0.7
3,202,575 - PfGW456L13_2875 0.33 +1.4
3,202,575 - PfGW456L13_2875 0.33 +2.7
3,202,575 - PfGW456L13_2875 0.33 +0.7
3,202,624 - PfGW456L13_2875 0.36 +0.1
3,203,066 + PfGW456L13_2875 0.68 +0.4
3,203,066 + PfGW456L13_2875 0.68 +1.0
3,203,066 + PfGW456L13_2875 0.68 +3.1
3,203,066 + PfGW456L13_2875 0.68 +1.7
3,203,066 + PfGW456L13_2875 0.68 +1.0
3,203,067 - PfGW456L13_2875 0.68 +0.1
3,203,067 - PfGW456L13_2875 0.68 -3.4
3,203,067 - PfGW456L13_2875 0.68 +0.4
3,203,067 - PfGW456L13_2875 0.68 -1.1
3,203,067 - PfGW456L13_2875 0.68 +1.1
3,203,127 + -1.8
3,203,127 + +1.4
3,203,127 + -1.2
3,203,127 + PfGW456L13_2875 0.72 -2.9
3,203,127 + PfGW456L13_2875 0.72 -1.6
3,203,127 + PfGW456L13_2875 0.72 -2.6
3,203,127 + PfGW456L13_2875 0.72 -1.8
3,203,127 + PfGW456L13_2875 0.72 -2.8
3,203,128 - PfGW456L13_2875 0.72 -2.0
3,203,128 - PfGW456L13_2875 0.72 -0.6
3,203,128 - PfGW456L13_2875 0.72 -2.0
3,203,128 - PfGW456L13_2875 0.72 +1.0
3,203,129 + PfGW456L13_2875 0.72 +0.0
3,203,129 + PfGW456L13_2875 0.72 -2.4
3,203,130 - PfGW456L13_2875 0.72 -3.0
3,203,130 - PfGW456L13_2875 0.72 +0.2
3,203,130 - PfGW456L13_2875 0.72 -1.4
3,203,197 + PfGW456L13_2875 0.77 -1.2
3,203,197 + PfGW456L13_2875 0.77 -0.6
3,203,197 + PfGW456L13_2875 0.77 +1.1
3,203,381 + PfGW456L13_2875 0.90 +0.7
3,203,381 + PfGW456L13_2875 0.90 +0.3
3,203,495 + +3.1
3,203,495 + +0.8
3,203,495 + -1.6
3,203,496 - -0.2
3,203,544 + +1.0
3,203,545 - +2.8
3,203,545 - -2.8
3,203,668 - -0.5
3,203,679 + +1.8
3,203,679 + +1.4
3,203,679 + -2.9
3,203,680 - +1.0
3,203,680 - +0.1
3,203,708 + -3.1
3,203,708 + -1.0
3,203,708 + -2.0
3,203,709 - -0.4
3,203,709 - +1.3
3,203,721 + -0.5
3,203,721 + +0.1
3,203,721 + +2.6
3,203,722 - +1.3
3,203,847 + PfGW456L13_2876 0.11 -0.2
3,203,847 + PfGW456L13_2876 0.11 +1.3
3,203,847 + PfGW456L13_2876 0.11 +1.6
3,203,847 + PfGW456L13_2876 0.11 -2.0
3,203,848 - PfGW456L13_2876 0.11 +1.1
3,203,848 - PfGW456L13_2876 0.11 -1.3
3,203,983 + PfGW456L13_2876 0.19 +1.1
3,203,984 - PfGW456L13_2876 0.19 +1.3
3,203,984 - PfGW456L13_2876 0.19 -1.8
3,204,209 + PfGW456L13_2876 0.34 +2.3
3,204,210 - PfGW456L13_2876 0.34 +0.6
3,204,210 - PfGW456L13_2876 0.34 +3.1
3,204,331 + PfGW456L13_2876 0.41 +0.6
3,204,356 - PfGW456L13_2876 0.43 -3.4
3,204,356 - PfGW456L13_2876 0.43 +0.6
3,204,434 + PfGW456L13_2876 0.48 -1.5
3,204,434 + PfGW456L13_2876 0.48 -1.0
3,204,434 + PfGW456L13_2876 0.48 +2.2
3,204,434 + PfGW456L13_2876 0.48 +0.4
3,204,434 + PfGW456L13_2876 0.48 +0.3
3,204,434 + PfGW456L13_2876 0.48 +0.7
3,204,435 - PfGW456L13_2876 0.48 +1.2
3,204,435 - PfGW456L13_2876 0.48 +0.1
3,204,435 - PfGW456L13_2876 0.48 -1.2
3,204,435 - PfGW456L13_2876 0.48 +0.9
3,204,435 - PfGW456L13_2876 0.48 +1.3
3,204,435 - PfGW456L13_2876 0.48 +0.7
3,204,453 - PfGW456L13_2876 0.49 -1.2
3,204,453 - PfGW456L13_2876 0.49 +1.2
3,204,509 + PfGW456L13_2876 0.53 +2.3
3,204,509 + PfGW456L13_2876 0.53 +0.7
3,204,509 + PfGW456L13_2876 0.53 +0.6
3,204,510 - PfGW456L13_2876 0.53 -1.2
3,204,517 + PfGW456L13_2876 0.53 -2.1
3,204,517 + PfGW456L13_2876 0.53 -2.0
3,204,517 + PfGW456L13_2876 0.53 -3.4
3,204,517 + PfGW456L13_2876 0.53 -2.3
3,204,517 + PfGW456L13_2876 0.53 -0.1
3,204,517 + PfGW456L13_2876 0.53 -0.7
3,204,517 + PfGW456L13_2876 0.53 -0.6
3,204,517 + PfGW456L13_2876 0.53 +3.5
3,204,517 + PfGW456L13_2876 0.53 +1.6
3,204,517 + PfGW456L13_2876 0.53 +0.3
3,204,517 + PfGW456L13_2876 0.53 +1.2
3,204,517 + PfGW456L13_2876 0.53 +1.6
3,204,517 + PfGW456L13_2876 0.53 +1.5
3,204,517 + PfGW456L13_2876 0.53 +0.2
3,204,517 + PfGW456L13_2876 0.53 -3.6
3,204,517 + PfGW456L13_2876 0.53 -2.7
3,204,517 + PfGW456L13_2876 0.53 +1.4
3,204,518 - PfGW456L13_2876 0.53 -0.0
3,204,518 - PfGW456L13_2876 0.53 +3.3
3,204,518 - PfGW456L13_2876 0.53 -2.6
3,204,518 - PfGW456L13_2876 0.53 +0.0
3,204,518 - PfGW456L13_2876 0.53 +1.5
3,204,518 - PfGW456L13_2876 0.53 +0.3
3,204,518 - PfGW456L13_2876 0.53 -2.0
3,204,518 - PfGW456L13_2876 0.53 -0.8
3,204,519 + PfGW456L13_2876 0.53 -1.5
3,204,519 + PfGW456L13_2876 0.53 +1.1
3,204,519 + PfGW456L13_2876 0.53 +1.6
3,204,519 + PfGW456L13_2876 0.53 +0.5
3,204,519 + PfGW456L13_2876 0.53 +3.1
3,204,520 - PfGW456L13_2876 0.53 +1.5
3,204,520 - PfGW456L13_2876 0.53 +2.1
3,204,520 - PfGW456L13_2876 0.53 -0.9
3,204,520 - PfGW456L13_2876 0.53 +1.0

Or see this region's nucleotide sequence