Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_189

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_188 and PfGW456L13_189 are separated by 121 nucleotidesPfGW456L13_189 and PfGW456L13_190 are separated by 11 nucleotides PfGW456L13_188 - Type I secretion outer membrane protein, TolC precursor, at 213,796 to 215,235 _188 PfGW456L13_189 - 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-), at 215,357 to 216,649 _189 PfGW456L13_190 - LysR family transcriptional regulator PA4989, at 216,661 to 217,563 _190 Position (kb) 215 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 214.369 kb on + strand, within PfGW456L13_188at 214.369 kb on + strand, within PfGW456L13_188at 214.369 kb on + strand, within PfGW456L13_188at 214.370 kb on - strand, within PfGW456L13_188at 214.370 kb on - strand, within PfGW456L13_188at 214.370 kb on - strand, within PfGW456L13_188at 214.456 kb on + strand, within PfGW456L13_188at 214.456 kb on + strand, within PfGW456L13_188at 214.456 kb on + strand, within PfGW456L13_188at 214.456 kb on + strand, within PfGW456L13_188at 214.456 kb on + strand, within PfGW456L13_188at 214.457 kb on - strand, within PfGW456L13_188at 214.457 kb on - strand, within PfGW456L13_188at 214.457 kb on - strand, within PfGW456L13_188at 214.457 kb on - strand, within PfGW456L13_188at 214.457 kb on - strand, within PfGW456L13_188at 214.573 kb on + strand, within PfGW456L13_188at 214.573 kb on + strand, within PfGW456L13_188at 214.573 kb on + strand, within PfGW456L13_188at 214.573 kb on + strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.574 kb on - strand, within PfGW456L13_188at 214.651 kb on + strand, within PfGW456L13_188at 214.651 kb on + strand, within PfGW456L13_188at 214.651 kb on + strand, within PfGW456L13_188at 214.651 kb on + strand, within PfGW456L13_188at 214.652 kb on - strandat 214.717 kb on + strand, within PfGW456L13_188at 214.718 kb on - strand, within PfGW456L13_188at 214.771 kb on + strand, within PfGW456L13_188at 214.771 kb on + strand, within PfGW456L13_188at 214.771 kb on + strand, within PfGW456L13_188at 214.772 kb on - strand, within PfGW456L13_188at 214.772 kb on - strand, within PfGW456L13_188at 214.810 kb on + strand, within PfGW456L13_188at 214.810 kb on + strand, within PfGW456L13_188at 214.810 kb on + strand, within PfGW456L13_188at 214.811 kb on - strand, within PfGW456L13_188at 214.811 kb on - strand, within PfGW456L13_188at 214.916 kb on + strand, within PfGW456L13_188at 214.917 kb on - strand, within PfGW456L13_188at 214.917 kb on - strand, within PfGW456L13_188at 215.032 kb on + strand, within PfGW456L13_188at 215.032 kb on + strand, within PfGW456L13_188at 215.032 kb on + strand, within PfGW456L13_188at 215.033 kb on - strand, within PfGW456L13_188at 215.033 kb on - strand, within PfGW456L13_188at 215.033 kb on - strand, within PfGW456L13_188at 215.033 kb on - strand, within PfGW456L13_188at 215.050 kb on + strand, within PfGW456L13_188at 215.051 kb on - strand, within PfGW456L13_188at 215.051 kb on - strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.071 kb on + strand, within PfGW456L13_188at 215.072 kb on - strand, within PfGW456L13_188at 215.072 kb on - strand, within PfGW456L13_188at 215.072 kb on - strand, within PfGW456L13_188at 215.161 kb on + strandat 215.161 kb on + strandat 215.161 kb on + strandat 215.161 kb on + strandat 215.161 kb on + strandat 215.161 kb on + strandat 215.161 kb on + strandat 215.162 kb on - strandat 215.287 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.307 kb on + strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.308 kb on - strandat 215.320 kb on + strandat 215.321 kb on - strandat 215.321 kb on - strandat 215.321 kb on - strandat 215.321 kb on - strandat 216.644 kb on - strandat 216.754 kb on + strand, within PfGW456L13_190at 216.755 kb on - strand, within PfGW456L13_190at 216.818 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.895 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 217.241 kb on + strand, within PfGW456L13_190at 217.593 kb on - strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.622 kb on - strandat 217.622 kb on - strandat 217.622 kb on - strandat 217.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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214,369 + PfGW456L13_188 0.40 +0.9
214,369 + PfGW456L13_188 0.40 -2.9
214,369 + PfGW456L13_188 0.40 +2.1
214,370 - PfGW456L13_188 0.40 -0.4
214,370 - PfGW456L13_188 0.40 -3.1
214,370 - PfGW456L13_188 0.40 +0.0
214,456 + PfGW456L13_188 0.46 +0.3
214,456 + PfGW456L13_188 0.46 -0.4
214,456 + PfGW456L13_188 0.46 +1.1
214,456 + PfGW456L13_188 0.46 -3.4
214,456 + PfGW456L13_188 0.46 -0.9
214,457 - PfGW456L13_188 0.46 -3.5
214,457 - PfGW456L13_188 0.46 -2.5
214,457 - PfGW456L13_188 0.46 -1.7
214,457 - PfGW456L13_188 0.46 -0.1
214,457 - PfGW456L13_188 0.46 +0.9
214,573 + PfGW456L13_188 0.54 +1.2
214,573 + PfGW456L13_188 0.54 -2.7
214,573 + PfGW456L13_188 0.54 +2.0
214,573 + PfGW456L13_188 0.54 +0.9
214,574 - PfGW456L13_188 0.54 +0.4
214,574 - PfGW456L13_188 0.54 -1.6
214,574 - PfGW456L13_188 0.54 -1.2
214,574 - PfGW456L13_188 0.54 +0.0
214,574 - PfGW456L13_188 0.54 -0.9
214,574 - PfGW456L13_188 0.54 +0.8
214,651 + PfGW456L13_188 0.59 -0.7
214,651 + PfGW456L13_188 0.59 +1.6
214,651 + PfGW456L13_188 0.59 -1.7
214,651 + PfGW456L13_188 0.59 -2.5
214,652 - +1.6
214,717 + PfGW456L13_188 0.64 -0.4
214,718 - PfGW456L13_188 0.64 -3.0
214,771 + PfGW456L13_188 0.68 +2.0
214,771 + PfGW456L13_188 0.68 +2.1
214,771 + PfGW456L13_188 0.68 +1.2
214,772 - PfGW456L13_188 0.68 -1.3
214,772 - PfGW456L13_188 0.68 -1.4
214,810 + PfGW456L13_188 0.70 -1.2
214,810 + PfGW456L13_188 0.70 +0.0
214,810 + PfGW456L13_188 0.70 +0.6
214,811 - PfGW456L13_188 0.70 -0.5
214,811 - PfGW456L13_188 0.70 +0.6
214,916 + PfGW456L13_188 0.78 -1.6
214,917 - PfGW456L13_188 0.78 +0.3
214,917 - PfGW456L13_188 0.78 +1.0
215,032 + PfGW456L13_188 0.86 +0.7
215,032 + PfGW456L13_188 0.86 -0.4
215,032 + PfGW456L13_188 0.86 +0.7
215,033 - PfGW456L13_188 0.86 +1.1
215,033 - PfGW456L13_188 0.86 -1.9
215,033 - PfGW456L13_188 0.86 -3.1
215,033 - PfGW456L13_188 0.86 +1.0
215,050 + PfGW456L13_188 0.87 -2.5
215,051 - PfGW456L13_188 0.87 +1.2
215,051 - PfGW456L13_188 0.87 -2.3
215,071 + PfGW456L13_188 0.89 +0.9
215,071 + PfGW456L13_188 0.89 +1.3
215,071 + PfGW456L13_188 0.89 +1.1
215,071 + PfGW456L13_188 0.89 -3.6
215,071 + PfGW456L13_188 0.89 -0.2
215,071 + PfGW456L13_188 0.89 +1.3
215,071 + PfGW456L13_188 0.89 +1.4
215,072 - PfGW456L13_188 0.89 +0.5
215,072 - PfGW456L13_188 0.89 +0.9
215,072 - PfGW456L13_188 0.89 -1.8
215,161 + +0.3
215,161 + -1.4
215,161 + +0.9
215,161 + +1.0
215,161 + -1.7
215,161 + +1.6
215,161 + +0.2
215,162 - -2.4
215,287 + +0.2
215,307 + +1.6
215,307 + -1.4
215,307 + +2.4
215,307 + -1.1
215,307 + -2.8
215,307 + +0.7
215,307 + -3.4
215,307 + +0.1
215,307 + -3.7
215,307 + -2.2
215,307 + -0.2
215,307 + +2.3
215,308 - -1.7
215,308 - +1.5
215,308 - -0.3
215,308 - -0.3
215,308 - +2.1
215,308 - +2.1
215,308 - +0.2
215,320 + +1.3
215,321 - +3.0
215,321 - -2.8
215,321 - +1.0
215,321 - +1.1
216,644 - +2.2
216,754 + PfGW456L13_190 0.10 +1.0
216,755 - PfGW456L13_190 0.10 -2.8
216,818 + PfGW456L13_190 0.17 -0.2
216,893 + PfGW456L13_190 0.26 +1.7
216,893 + PfGW456L13_190 0.26 +1.8
216,893 + PfGW456L13_190 0.26 +1.7
216,893 + PfGW456L13_190 0.26 +0.1
216,893 + PfGW456L13_190 0.26 -0.6
216,893 + PfGW456L13_190 0.26 +0.8
216,893 + PfGW456L13_190 0.26 -2.7
216,893 + PfGW456L13_190 0.26 -0.6
216,893 + PfGW456L13_190 0.26 -0.9
216,894 - PfGW456L13_190 0.26 -2.6
216,894 - PfGW456L13_190 0.26 +0.7
216,894 - PfGW456L13_190 0.26 +0.5
216,894 - PfGW456L13_190 0.26 -2.0
216,894 - PfGW456L13_190 0.26 -1.0
216,894 - PfGW456L13_190 0.26 +0.5
216,894 - PfGW456L13_190 0.26 -0.5
216,894 - PfGW456L13_190 0.26 -2.7
216,894 - PfGW456L13_190 0.26 +0.4
216,894 - PfGW456L13_190 0.26 +0.0
216,894 - PfGW456L13_190 0.26 -1.9
216,894 - PfGW456L13_190 0.26 +1.6
216,894 - PfGW456L13_190 0.26 -1.3
216,895 + PfGW456L13_190 0.26 -2.3
216,944 + PfGW456L13_190 0.31 -2.3
216,944 + PfGW456L13_190 0.31 -2.7
216,944 + PfGW456L13_190 0.31 -0.4
217,241 + PfGW456L13_190 0.64 +1.4
217,593 - +0.3
217,621 + +0.6
217,621 + +0.6
217,621 + +0.0
217,621 + +1.0
217,622 - -4.3
217,622 - -2.5
217,622 - -0.6
217,622 - +0.1

Or see this region's nucleotide sequence