Experiment: octanoate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00584 and PFR28_00585 are separated by 372 nucleotides PFR28_00585 and PFR28_00586 are separated by 97 nucleotides PFR28_00586 and PFR28_00587 are separated by 194 nucleotides
PFR28_00584: PFR28_00584 - Long-chain-fatty-acid--CoA ligase, at 625,012 to 626,700
_00584
PFR28_00585: PFR28_00585 - Long-chain-fatty-acid--CoA ligase, at 627,073 to 628,764
_00585
PFR28_00586: PFR28_00586 - hypothetical protein, at 628,862 to 629,239
_00586
PFR28_00587: PFR28_00587 - hypothetical protein, at 629,434 to 629,625
_00587
Position (kb) 627
628
629 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 626.104 kb on + strand, within PFR28_00584 at 626.105 kb on - strand, within PFR28_00584 at 626.147 kb on - strand, within PFR28_00584 at 626.147 kb on - strand, within PFR28_00584 at 626.170 kb on - strand, within PFR28_00584 at 626.175 kb on - strand, within PFR28_00584 at 626.385 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.432 kb on + strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.433 kb on - strand, within PFR28_00584 at 626.434 kb on + strand, within PFR28_00584 at 626.434 kb on + strand, within PFR28_00584 at 626.434 kb on + strand, within PFR28_00584 at 626.584 kb on + strand at 626.585 kb on - strand at 626.585 kb on - strand at 626.608 kb on + strand at 626.608 kb on + strand at 626.609 kb on - strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.827 kb on + strand at 626.828 kb on - strand at 626.828 kb on - strand at 626.828 kb on - strand at 626.828 kb on - strand at 626.828 kb on - strand at 626.828 kb on - strand at 626.867 kb on + strand at 626.951 kb on + strand at 626.951 kb on + strand at 626.952 kb on - strand at 627.020 kb on + strand at 627.020 kb on + strand at 627.021 kb on - strand at 627.021 kb on - strand at 627.021 kb on - strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.096 kb on + strand at 627.097 kb on - strand at 627.097 kb on - strand at 627.097 kb on - strand at 627.097 kb on - strand at 627.097 kb on - strand at 627.100 kb on + strand at 627.100 kb on + strand at 627.100 kb on + strand at 627.139 kb on + strand at 627.140 kb on - strand at 627.227 kb on - strand at 627.227 kb on - strand at 627.238 kb on + strand at 627.238 kb on + strand at 627.238 kb on + strand at 627.266 kb on - strand, within PFR28_00585 at 627.279 kb on + strand, within PFR28_00585 at 627.279 kb on + strand, within PFR28_00585 at 627.280 kb on - strand, within PFR28_00585 at 627.397 kb on + strand, within PFR28_00585 at 627.397 kb on + strand, within PFR28_00585 at 627.398 kb on - strand, within PFR28_00585 at 627.398 kb on - strand, within PFR28_00585 at 627.398 kb on - strand, within PFR28_00585 at 627.452 kb on + strand, within PFR28_00585 at 627.452 kb on + strand, within PFR28_00585 at 627.452 kb on + strand, within PFR28_00585 at 627.452 kb on + strand, within PFR28_00585 at 627.452 kb on + strand, within PFR28_00585 at 627.453 kb on - strand, within PFR28_00585 at 627.453 kb on - strand, within PFR28_00585 at 627.583 kb on + strand, within PFR28_00585 at 627.583 kb on + strand, within PFR28_00585 at 627.583 kb on + strand, within PFR28_00585 at 627.583 kb on + strand, within PFR28_00585 at 627.583 kb on + strand, within PFR28_00585 at 627.584 kb on - strand, within PFR28_00585 at 627.584 kb on - strand, within PFR28_00585 at 627.584 kb on - strand, within PFR28_00585 at 627.584 kb on - strand, within PFR28_00585 at 627.584 kb on - strand, within PFR28_00585 at 627.712 kb on + strand, within PFR28_00585 at 627.712 kb on + strand, within PFR28_00585 at 627.712 kb on + strand, within PFR28_00585 at 627.713 kb on - strand, within PFR28_00585 at 627.713 kb on - strand, within PFR28_00585 at 627.713 kb on - strand, within PFR28_00585 at 627.853 kb on + strand, within PFR28_00585 at 627.853 kb on + strand, within PFR28_00585 at 627.853 kb on + strand, within PFR28_00585 at 627.854 kb on - strand, within PFR28_00585 at 627.854 kb on - strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.862 kb on + strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.863 kb on - strand, within PFR28_00585 at 627.996 kb on + strand, within PFR28_00585 at 627.996 kb on + strand, within PFR28_00585 at 628.324 kb on + strand, within PFR28_00585 at 628.325 kb on - strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.414 kb on + strand, within PFR28_00585 at 628.415 kb on - strand, within PFR28_00585 at 628.415 kb on - strand, within PFR28_00585 at 628.415 kb on - strand, within PFR28_00585 at 628.423 kb on - strand, within PFR28_00585 at 628.538 kb on + strand, within PFR28_00585 at 628.648 kb on + strand at 628.649 kb on - strand at 628.762 kb on + strand at 628.762 kb on + strand at 628.763 kb on - strand at 628.816 kb on + strand at 628.816 kb on + strand at 628.816 kb on + strand at 628.817 kb on - strand at 628.863 kb on + strand at 628.863 kb on + strand at 628.864 kb on - strand at 628.920 kb on + strand, within PFR28_00586 at 628.920 kb on + strand, within PFR28_00586 at 628.920 kb on + strand, within PFR28_00586 at 628.920 kb on + strand, within PFR28_00586 at 628.921 kb on - strand, within PFR28_00586 at 628.921 kb on - strand, within PFR28_00586 at 628.921 kb on - strand, within PFR28_00586 at 628.921 kb on - strand, within PFR28_00586 at 628.978 kb on + strand, within PFR28_00586 at 628.979 kb on - strand, within PFR28_00586 at 628.979 kb on - strand, within PFR28_00586 at 628.982 kb on + strand, within PFR28_00586 at 628.982 kb on + strand, within PFR28_00586 at 628.982 kb on + strand, within PFR28_00586 at 628.983 kb on - strand, within PFR28_00586 at 628.983 kb on - strand, within PFR28_00586 at 628.983 kb on - strand, within PFR28_00586 at 628.983 kb on - strand, within PFR28_00586 at 629.024 kb on + strand, within PFR28_00586 at 629.167 kb on + strand, within PFR28_00586 at 629.168 kb on - strand, within PFR28_00586 at 629.168 kb on - strand, within PFR28_00586 at 629.168 kb on - strand, within PFR28_00586 at 629.168 kb on - strand, within PFR28_00586 at 629.180 kb on + strand, within PFR28_00586 at 629.181 kb on - strand, within PFR28_00586 at 629.239 kb on + strand at 629.240 kb on - strand at 629.240 kb on - strand at 629.240 kb on - strand at 629.248 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.280 kb on + strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.281 kb on - strand at 629.315 kb on + strand at 629.315 kb on + strand at 629.316 kb on - strand at 629.316 kb on - strand at 629.316 kb on - strand at 629.344 kb on + strand at 629.344 kb on + strand at 629.345 kb on - strand at 629.345 kb on - strand at 629.345 kb on - strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.392 kb on + strand at 629.393 kb on - strand at 629.393 kb on - strand at 629.393 kb on - strand at 629.393 kb on - strand at 629.393 kb on - strand at 629.396 kb on + strand at 629.396 kb on + strand at 629.396 kb on + strand at 629.396 kb on + strand at 629.397 kb on - strand at 629.397 kb on - strand at 629.397 kb on - strand at 629.397 kb on - strand at 629.397 kb on - strand at 629.410 kb on - strand at 629.440 kb on - strand at 629.451 kb on + strand at 629.731 kb on + strand at 629.732 kb on - strand at 629.732 kb on - strand at 629.732 kb on - strand at 629.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) 10 mM remove 626,104 + PFR28_00584 0.65 -1.8 626,105 - PFR28_00584 0.65 +0.5 626,147 - PFR28_00584 0.67 -0.1 626,147 - PFR28_00584 0.67 -0.2 626,170 - PFR28_00584 0.69 -0.2 626,175 - PFR28_00584 0.69 -1.2 626,385 + PFR28_00584 0.81 +0.4 626,432 + PFR28_00584 0.84 -1.6 626,432 + PFR28_00584 0.84 -0.7 626,432 + PFR28_00584 0.84 -0.7 626,432 + PFR28_00584 0.84 -0.4 626,432 + PFR28_00584 0.84 -1.7 626,432 + PFR28_00584 0.84 +0.8 626,432 + PFR28_00584 0.84 -1.3 626,432 + PFR28_00584 0.84 -0.6 626,432 + PFR28_00584 0.84 +0.0 626,432 + PFR28_00584 0.84 -1.0 626,432 + PFR28_00584 0.84 -0.0 626,433 - PFR28_00584 0.84 -0.6 626,433 - PFR28_00584 0.84 +0.3 626,433 - PFR28_00584 0.84 -0.6 626,433 - PFR28_00584 0.84 +0.0 626,433 - PFR28_00584 0.84 +0.5 626,433 - PFR28_00584 0.84 -2.2 626,433 - PFR28_00584 0.84 +1.5 626,434 + PFR28_00584 0.84 -1.1 626,434 + PFR28_00584 0.84 -0.0 626,434 + PFR28_00584 0.84 -1.4 626,584 + -1.8 626,585 - -0.2 626,585 - -0.2 626,608 + -0.6 626,608 + -0.4 626,609 - +0.2 626,827 + -0.0 626,827 + -0.2 626,827 + +0.5 626,827 + +0.7 626,827 + -0.3 626,827 + -0.4 626,827 + -1.5 626,827 + -1.6 626,828 - -0.8 626,828 - -1.0 626,828 - +0.1 626,828 - -0.1 626,828 - -0.7 626,828 - +0.7 626,867 + +0.1 626,951 + -1.3 626,951 + -0.6 626,952 - -3.3 627,020 + -1.6 627,020 + -0.2 627,021 - -1.4 627,021 - -1.8 627,021 - -1.1 627,096 + -3.2 627,096 + -2.2 627,096 + -4.8 627,096 + -3.5 627,096 + -2.7 627,096 + -2.7 627,096 + -1.5 627,096 + -2.4 627,096 + -1.8 627,097 - -3.0 627,097 - -1.7 627,097 - -1.9 627,097 - -0.7 627,097 - -1.4 627,100 + -3.0 627,100 + -1.7 627,100 + -3.2 627,139 + -4.2 627,140 - -1.0 627,227 - -2.4 627,227 - -0.4 627,238 + -2.8 627,238 + -2.4 627,238 + -2.0 627,266 - PFR28_00585 0.11 -0.7 627,279 + PFR28_00585 0.12 -3.2 627,279 + PFR28_00585 0.12 -2.0 627,280 - PFR28_00585 0.12 -3.8 627,397 + PFR28_00585 0.19 -1.4 627,397 + PFR28_00585 0.19 -0.8 627,398 - PFR28_00585 0.19 -2.1 627,398 - PFR28_00585 0.19 -2.4 627,398 - PFR28_00585 0.19 -2.1 627,452 + PFR28_00585 0.22 -3.2 627,452 + PFR28_00585 0.22 -3.0 627,452 + PFR28_00585 0.22 -3.6 627,452 + PFR28_00585 0.22 -2.9 627,452 + PFR28_00585 0.22 -3.8 627,453 - PFR28_00585 0.22 -3.3 627,453 - PFR28_00585 0.22 -1.7 627,583 + PFR28_00585 0.30 -0.7 627,583 + PFR28_00585 0.30 -1.9 627,583 + PFR28_00585 0.30 -2.0 627,583 + PFR28_00585 0.30 -2.9 627,583 + PFR28_00585 0.30 -2.1 627,584 - PFR28_00585 0.30 -2.5 627,584 - PFR28_00585 0.30 -0.7 627,584 - PFR28_00585 0.30 -3.2 627,584 - PFR28_00585 0.30 -2.0 627,584 - PFR28_00585 0.30 -0.6 627,712 + PFR28_00585 0.38 -3.6 627,712 + PFR28_00585 0.38 -2.0 627,712 + PFR28_00585 0.38 -2.0 627,713 - PFR28_00585 0.38 -3.7 627,713 - PFR28_00585 0.38 -2.3 627,713 - PFR28_00585 0.38 -0.9 627,853 + PFR28_00585 0.46 -2.5 627,853 + PFR28_00585 0.46 -2.9 627,853 + PFR28_00585 0.46 -1.1 627,854 - PFR28_00585 0.46 -5.3 627,854 - PFR28_00585 0.46 -1.6 627,862 + PFR28_00585 0.47 -2.4 627,862 + PFR28_00585 0.47 -1.6 627,862 + PFR28_00585 0.47 -1.6 627,862 + PFR28_00585 0.47 -2.8 627,862 + PFR28_00585 0.47 -1.6 627,862 + PFR28_00585 0.47 -2.9 627,862 + PFR28_00585 0.47 -2.1 627,862 + PFR28_00585 0.47 -2.2 627,862 + PFR28_00585 0.47 -2.7 627,862 + PFR28_00585 0.47 -2.9 627,862 + PFR28_00585 0.47 -1.8 627,862 + PFR28_00585 0.47 -1.4 627,862 + PFR28_00585 0.47 +0.4 627,862 + PFR28_00585 0.47 -1.0 627,862 + PFR28_00585 0.47 -3.8 627,862 + PFR28_00585 0.47 -2.6 627,863 - PFR28_00585 0.47 -2.4 627,863 - PFR28_00585 0.47 -1.4 627,863 - PFR28_00585 0.47 -3.9 627,863 - PFR28_00585 0.47 -2.0 627,863 - PFR28_00585 0.47 -3.0 627,863 - PFR28_00585 0.47 -2.5 627,863 - PFR28_00585 0.47 -2.1 627,863 - PFR28_00585 0.47 -2.7 627,863 - PFR28_00585 0.47 -1.8 627,863 - PFR28_00585 0.47 -1.8 627,863 - PFR28_00585 0.47 -1.7 627,863 - PFR28_00585 0.47 -2.7 627,863 - PFR28_00585 0.47 -0.6 627,863 - PFR28_00585 0.47 -2.8 627,863 - PFR28_00585 0.47 -2.3 627,863 - PFR28_00585 0.47 -2.7 627,863 - PFR28_00585 0.47 -3.2 627,863 - PFR28_00585 0.47 -1.2 627,863 - PFR28_00585 0.47 -3.2 627,996 + PFR28_00585 0.55 -1.2 627,996 + PFR28_00585 0.55 -1.9 628,324 + PFR28_00585 0.74 -2.7 628,325 - PFR28_00585 0.74 -2.4 628,414 + PFR28_00585 0.79 -2.9 628,414 + PFR28_00585 0.79 -2.3 628,414 + PFR28_00585 0.79 -2.8 628,414 + PFR28_00585 0.79 -2.0 628,414 + PFR28_00585 0.79 -2.0 628,414 + PFR28_00585 0.79 -1.6 628,415 - PFR28_00585 0.79 -1.5 628,415 - PFR28_00585 0.79 -2.8 628,415 - PFR28_00585 0.79 -3.0 628,423 - PFR28_00585 0.80 -0.8 628,538 + PFR28_00585 0.87 -0.6 628,648 + -2.5 628,649 - -2.0 628,762 + +0.1 628,762 + +0.2 628,763 - -1.0 628,816 + -0.8 628,816 + +0.2 628,816 + -0.8 628,817 - +0.0 628,863 + -1.8 628,863 + +0.0 628,864 - +0.9 628,920 + PFR28_00586 0.15 -0.2 628,920 + PFR28_00586 0.15 +0.4 628,920 + PFR28_00586 0.15 +1.4 628,920 + PFR28_00586 0.15 -0.4 628,921 - PFR28_00586 0.16 -0.4 628,921 - PFR28_00586 0.16 -1.2 628,921 - PFR28_00586 0.16 +0.7 628,921 - PFR28_00586 0.16 -0.9 628,978 + PFR28_00586 0.31 -1.4 628,979 - PFR28_00586 0.31 +0.4 628,979 - PFR28_00586 0.31 -0.2 628,982 + PFR28_00586 0.32 +0.4 628,982 + PFR28_00586 0.32 +0.3 628,982 + PFR28_00586 0.32 -1.1 628,983 - PFR28_00586 0.32 -0.3 628,983 - PFR28_00586 0.32 +0.0 628,983 - PFR28_00586 0.32 -1.0 628,983 - PFR28_00586 0.32 +0.0 629,024 + PFR28_00586 0.43 -1.1 629,167 + PFR28_00586 0.81 +1.6 629,168 - PFR28_00586 0.81 -0.4 629,168 - PFR28_00586 0.81 -1.6 629,168 - PFR28_00586 0.81 -0.2 629,168 - PFR28_00586 0.81 -0.2 629,180 + PFR28_00586 0.84 -1.0 629,181 - PFR28_00586 0.84 +1.4 629,239 + +0.3 629,240 - -1.2 629,240 - -1.7 629,240 - -1.7 629,248 + -0.0 629,280 + +0.1 629,280 + -0.4 629,280 + +0.1 629,280 + -0.2 629,280 + +0.1 629,280 + -0.5 629,280 + +0.1 629,280 + +0.0 629,281 - +0.4 629,281 - -0.2 629,281 - -0.8 629,281 - -1.6 629,281 - -0.6 629,281 - -0.8 629,281 - +0.5 629,281 - -0.7 629,281 - -0.0 629,315 + -0.2 629,315 + +0.3 629,316 - -0.3 629,316 - -0.5 629,316 - -0.7 629,344 + -0.1 629,344 + -0.1 629,345 - +1.5 629,345 - -3.5 629,345 - +1.1 629,392 + +0.2 629,392 + +0.3 629,392 + -0.4 629,392 + +0.6 629,392 + +0.8 629,392 + -1.1 629,392 + +0.4 629,392 + -0.2 629,392 + -1.1 629,393 - -0.0 629,393 - -0.1 629,393 - -0.8 629,393 - +0.1 629,393 - -0.2 629,396 + -1.3 629,396 + -1.0 629,396 + -0.1 629,396 + -0.2 629,397 - +0.3 629,397 - -0.8 629,397 - -0.0 629,397 - -0.2 629,397 - -0.0 629,410 - +1.7 629,440 - -1.3 629,451 + -1.9 629,731 + +0.5 629,732 - -2.0 629,732 - +0.0 629,732 - +0.7 629,745 + +0.0
Or see this region's nucleotide sequence