Strain Fitness in Pseudomonas sp. RS175 around PFR28_00580

Experiment: octanoate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00579 and PFR28_00580 overlap by 14 nucleotidesPFR28_00580 and PFR28_00581 are separated by 10 nucleotidesPFR28_00581 and PFR28_00582 are separated by 75 nucleotides PFR28_00579: PFR28_00579 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 620,022 to 622,022 _00579 PFR28_00580: PFR28_00580 - hypothetical protein, at 622,009 to 622,215 _00580 PFR28_00581: PFR28_00581 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 622,226 to 623,089 _00581 PFR28_00582: PFR28_00582 - (R)-specific enoyl-CoA hydratase, at 623,165 to 623,635 _00582 Position (kb) 622 623Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 621.070 kb on + strand, within PFR28_00579at 621.071 kb on - strand, within PFR28_00579at 621.071 kb on - strand, within PFR28_00579at 621.435 kb on + strand, within PFR28_00579at 621.435 kb on + strand, within PFR28_00579at 621.436 kb on - strand, within PFR28_00579at 621.436 kb on - strand, within PFR28_00579at 621.540 kb on - strand, within PFR28_00579at 621.798 kb on + strand, within PFR28_00579at 621.820 kb on + strand, within PFR28_00579at 621.820 kb on + strand, within PFR28_00579at 621.820 kb on + strand, within PFR28_00579at 621.820 kb on + strand, within PFR28_00579at 621.821 kb on - strand, within PFR28_00579at 622.063 kb on + strand, within PFR28_00580at 622.063 kb on + strand, within PFR28_00580at 622.063 kb on + strand, within PFR28_00580at 622.063 kb on + strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.064 kb on - strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.168 kb on + strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.169 kb on - strand, within PFR28_00580at 622.191 kb on + strand, within PFR28_00580at 622.191 kb on + strand, within PFR28_00580at 622.191 kb on + strand, within PFR28_00580at 622.192 kb on - strand, within PFR28_00580at 622.212 kb on - strandat 622.212 kb on - strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.213 kb on + strandat 622.214 kb on - strandat 622.214 kb on - strandat 622.214 kb on - strandat 622.240 kb on - strandat 622.304 kb on + strandat 622.304 kb on + strandat 622.304 kb on + strandat 622.304 kb on + strandat 622.304 kb on + strandat 622.304 kb on + strandat 622.305 kb on - strandat 622.305 kb on - strandat 622.305 kb on - strandat 622.305 kb on - strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.307 kb on + strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.308 kb on - strandat 622.705 kb on + strand, within PFR28_00581at 622.705 kb on + strand, within PFR28_00581at 622.706 kb on - strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.736 kb on + strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.737 kb on - strand, within PFR28_00581at 622.787 kb on + strand, within PFR28_00581at 622.787 kb on + strand, within PFR28_00581at 622.787 kb on + strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.788 kb on - strand, within PFR28_00581at 622.799 kb on + strand, within PFR28_00581at 622.799 kb on + strand, within PFR28_00581at 622.800 kb on - strand, within PFR28_00581at 622.800 kb on - strand, within PFR28_00581at 622.924 kb on + strand, within PFR28_00581at 622.924 kb on + strand, within PFR28_00581at 622.924 kb on + strand, within PFR28_00581at 622.924 kb on + strand, within PFR28_00581at 622.925 kb on - strand, within PFR28_00581at 622.925 kb on - strand, within PFR28_00581at 622.925 kb on - strand, within PFR28_00581at 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.087 kb on + strandat 623.088 kb on - strandat 623.088 kb on - strandat 623.088 kb on - strandat 623.088 kb on - strandat 623.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C) 10 mM
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621,070 + PFR28_00579 0.52 -1.8
621,071 - PFR28_00579 0.52 -2.9
621,071 - PFR28_00579 0.52 -3.0
621,435 + PFR28_00579 0.71 -1.4
621,435 + PFR28_00579 0.71 -1.4
621,436 - PFR28_00579 0.71 -2.4
621,436 - PFR28_00579 0.71 -0.9
621,540 - PFR28_00579 0.76 -1.7
621,798 + PFR28_00579 0.89 -1.4
621,820 + PFR28_00579 0.90 -2.4
621,820 + PFR28_00579 0.90 -2.2
621,820 + PFR28_00579 0.90 -1.3
621,820 + PFR28_00579 0.90 -3.9
621,821 - PFR28_00579 0.90 -3.1
622,063 + PFR28_00580 0.26 +0.4
622,063 + PFR28_00580 0.26 -2.0
622,063 + PFR28_00580 0.26 -3.2
622,063 + PFR28_00580 0.26 -3.8
622,064 - PFR28_00580 0.27 -1.0
622,064 - PFR28_00580 0.27 -3.0
622,064 - PFR28_00580 0.27 -1.4
622,064 - PFR28_00580 0.27 -4.6
622,064 - PFR28_00580 0.27 -0.9
622,064 - PFR28_00580 0.27 -2.8
622,064 - PFR28_00580 0.27 -2.4
622,064 - PFR28_00580 0.27 -0.6
622,064 - PFR28_00580 0.27 -1.5
622,064 - PFR28_00580 0.27 -2.1
622,168 + PFR28_00580 0.77 -1.8
622,168 + PFR28_00580 0.77 -2.9
622,168 + PFR28_00580 0.77 -3.7
622,168 + PFR28_00580 0.77 -2.7
622,168 + PFR28_00580 0.77 -3.6
622,168 + PFR28_00580 0.77 -3.0
622,168 + PFR28_00580 0.77 +0.4
622,168 + PFR28_00580 0.77 -3.4
622,168 + PFR28_00580 0.77 -3.6
622,168 + PFR28_00580 0.77 -3.0
622,168 + PFR28_00580 0.77 -2.7
622,169 - PFR28_00580 0.77 -0.9
622,169 - PFR28_00580 0.77 -4.4
622,169 - PFR28_00580 0.77 -1.4
622,169 - PFR28_00580 0.77 -2.1
622,169 - PFR28_00580 0.77 -2.9
622,169 - PFR28_00580 0.77 -3.2
622,169 - PFR28_00580 0.77 -0.4
622,169 - PFR28_00580 0.77 -2.0
622,191 + PFR28_00580 0.88 -0.5
622,191 + PFR28_00580 0.88 -0.9
622,191 + PFR28_00580 0.88 -1.0
622,192 - PFR28_00580 0.88 -2.6
622,212 - -1.2
622,212 - -0.3
622,213 + -0.7
622,213 + +0.4
622,213 + -1.4
622,213 + +0.3
622,213 + +0.1
622,213 + +0.6
622,213 + -0.3
622,213 + -0.8
622,214 - -0.7
622,214 - -1.1
622,214 - -1.6
622,240 - -0.8
622,304 + -1.2
622,304 + -3.6
622,304 + -1.3
622,304 + -2.0
622,304 + -2.7
622,304 + -1.2
622,305 - -2.3
622,305 - -1.2
622,305 - -0.2
622,305 - -1.0
622,307 + -1.8
622,307 + -1.8
622,307 + -1.6
622,307 + -2.1
622,307 + -2.5
622,307 + -2.0
622,307 + -1.9
622,307 + -3.1
622,307 + -3.5
622,307 + -3.7
622,307 + +1.4
622,307 + -1.5
622,307 + -2.0
622,307 + -2.2
622,307 + -2.3
622,307 + -0.8
622,308 - -0.6
622,308 - -2.7
622,308 - -1.3
622,308 - -1.6
622,308 - -1.2
622,308 - +0.5
622,308 - -1.8
622,308 - -1.4
622,308 - -2.1
622,308 - -2.2
622,308 - -1.9
622,308 - -1.1
622,308 - -1.0
622,308 - -2.2
622,308 - -1.4
622,308 - -0.7
622,308 - -2.3
622,308 - -1.2
622,705 + PFR28_00581 0.55 -1.7
622,705 + PFR28_00581 0.55 -2.5
622,706 - PFR28_00581 0.56 -3.5
622,736 + PFR28_00581 0.59 -3.6
622,736 + PFR28_00581 0.59 -1.7
622,736 + PFR28_00581 0.59 -3.3
622,736 + PFR28_00581 0.59 -1.0
622,736 + PFR28_00581 0.59 -1.8
622,736 + PFR28_00581 0.59 -2.9
622,736 + PFR28_00581 0.59 -3.0
622,736 + PFR28_00581 0.59 -1.9
622,736 + PFR28_00581 0.59 -3.2
622,736 + PFR28_00581 0.59 -1.5
622,736 + PFR28_00581 0.59 -1.5
622,736 + PFR28_00581 0.59 -3.2
622,736 + PFR28_00581 0.59 -1.9
622,736 + PFR28_00581 0.59 -2.3
622,736 + PFR28_00581 0.59 -1.7
622,737 - PFR28_00581 0.59 -1.2
622,737 - PFR28_00581 0.59 -2.9
622,737 - PFR28_00581 0.59 -1.4
622,737 - PFR28_00581 0.59 -3.2
622,737 - PFR28_00581 0.59 -0.0
622,737 - PFR28_00581 0.59 -2.2
622,737 - PFR28_00581 0.59 -1.8
622,737 - PFR28_00581 0.59 -2.9
622,737 - PFR28_00581 0.59 -2.6
622,737 - PFR28_00581 0.59 -2.7
622,737 - PFR28_00581 0.59 -2.9
622,787 + PFR28_00581 0.65 -1.0
622,787 + PFR28_00581 0.65 -1.6
622,787 + PFR28_00581 0.65 -1.5
622,788 - PFR28_00581 0.65 -2.0
622,788 - PFR28_00581 0.65 +0.1
622,788 - PFR28_00581 0.65 -2.2
622,788 - PFR28_00581 0.65 -0.6
622,788 - PFR28_00581 0.65 -1.6
622,788 - PFR28_00581 0.65 -1.6
622,788 - PFR28_00581 0.65 -1.9
622,788 - PFR28_00581 0.65 -2.4
622,788 - PFR28_00581 0.65 -3.0
622,788 - PFR28_00581 0.65 -0.7
622,788 - PFR28_00581 0.65 -2.2
622,799 + PFR28_00581 0.66 -3.4
622,799 + PFR28_00581 0.66 -1.4
622,800 - PFR28_00581 0.66 -2.6
622,800 - PFR28_00581 0.66 -2.3
622,924 + PFR28_00581 0.81 -2.4
622,924 + PFR28_00581 0.81 -4.2
622,924 + PFR28_00581 0.81 -1.4
622,924 + PFR28_00581 0.81 -2.7
622,925 - PFR28_00581 0.81 -2.5
622,925 - PFR28_00581 0.81 -2.3
622,925 - PFR28_00581 0.81 -1.2
623,087 + +0.4
623,087 + -0.3
623,087 + -0.5
623,087 + +1.4
623,087 + -0.1
623,087 + +0.5
623,087 + +0.1
623,087 + +0.0
623,088 - -0.6
623,088 - -0.0
623,088 - -0.3
623,088 - +0.5
623,162 + +0.1

Or see this region's nucleotide sequence