Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4299

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4297 and Echvi_4298 are separated by 145 nucleotidesEchvi_4298 and Echvi_4299 are separated by 12 nucleotidesEchvi_4299 and Echvi_4300 are separated by 59 nucleotidesEchvi_4300 and Echvi_4301 overlap by 4 nucleotides Echvi_4297: Echvi_4297 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 5,138,894 to 5,139,739 _4297 Echvi_4298: Echvi_4298 - Predicted lactoylglutathione lyase, at 5,139,885 to 5,140,301 _4298 Echvi_4299: Echvi_4299 - Protein of unknown function (DUF2703)., at 5,140,314 to 5,140,781 _4299 Echvi_4300: Echvi_4300 - RNA polymerase sigma factor, sigma-70 family, at 5,140,841 to 5,141,389 _4300 Echvi_4301: Echvi_4301 - hypothetical protein, at 5,141,386 to 5,141,883 _4301 Position (kb) 5140 5141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5139.401 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.446 kb on + strand, within Echvi_4297at 5139.447 kb on - strand, within Echvi_4297at 5139.447 kb on - strand, within Echvi_4297at 5139.537 kb on + strand, within Echvi_4297at 5139.563 kb on - strand, within Echvi_4297at 5139.627 kb on + strand, within Echvi_4297at 5139.630 kb on - strand, within Echvi_4297at 5139.643 kb on + strand, within Echvi_4297at 5139.663 kb on - strandat 5139.790 kb on - strandat 5139.790 kb on - strandat 5139.790 kb on - strandat 5139.790 kb on - strandat 5139.791 kb on + strandat 5139.792 kb on - strandat 5139.797 kb on + strandat 5139.797 kb on + strandat 5139.798 kb on - strandat 5139.798 kb on - strandat 5139.798 kb on - strandat 5139.805 kb on + strandat 5139.819 kb on + strandat 5139.822 kb on + strandat 5139.863 kb on + strandat 5139.864 kb on - strandat 5139.888 kb on + strandat 5139.889 kb on - strandat 5139.889 kb on - strandat 5139.889 kb on - strandat 5139.889 kb on - strandat 5139.889 kb on - strandat 5139.890 kb on + strandat 5139.896 kb on + strandat 5139.896 kb on + strandat 5139.897 kb on - strandat 5139.897 kb on - strandat 5139.899 kb on + strandat 5139.900 kb on - strandat 5139.902 kb on - strandat 5139.917 kb on + strandat 5139.949 kb on + strand, within Echvi_4298at 5139.967 kb on + strand, within Echvi_4298at 5139.971 kb on - strand, within Echvi_4298at 5140.032 kb on + strand, within Echvi_4298at 5140.055 kb on + strand, within Echvi_4298at 5140.055 kb on + strand, within Echvi_4298at 5140.055 kb on + strand, within Echvi_4298at 5140.056 kb on - strand, within Echvi_4298at 5140.098 kb on + strand, within Echvi_4298at 5140.098 kb on + strand, within Echvi_4298at 5140.098 kb on + strand, within Echvi_4298at 5140.112 kb on + strand, within Echvi_4298at 5140.167 kb on - strand, within Echvi_4298at 5140.208 kb on + strand, within Echvi_4298at 5140.228 kb on - strand, within Echvi_4298at 5140.234 kb on - strand, within Echvi_4298at 5140.234 kb on - strand, within Echvi_4298at 5140.234 kb on - strand, within Echvi_4298at 5140.257 kb on + strand, within Echvi_4298at 5140.258 kb on - strand, within Echvi_4298at 5140.258 kb on - strand, within Echvi_4298at 5140.304 kb on + strandat 5140.305 kb on - strandat 5140.305 kb on - strandat 5140.316 kb on - strandat 5140.370 kb on + strand, within Echvi_4299at 5140.370 kb on + strand, within Echvi_4299at 5140.371 kb on - strand, within Echvi_4299at 5140.371 kb on - strand, within Echvi_4299at 5140.372 kb on + strand, within Echvi_4299at 5140.373 kb on - strand, within Echvi_4299at 5140.417 kb on + strand, within Echvi_4299at 5140.437 kb on + strand, within Echvi_4299at 5140.470 kb on + strand, within Echvi_4299at 5140.471 kb on - strand, within Echvi_4299at 5140.515 kb on - strand, within Echvi_4299at 5140.537 kb on + strand, within Echvi_4299at 5140.554 kb on - strand, within Echvi_4299at 5140.653 kb on + strand, within Echvi_4299at 5140.653 kb on + strand, within Echvi_4299at 5140.653 kb on + strand, within Echvi_4299at 5140.674 kb on + strand, within Echvi_4299at 5140.674 kb on + strand, within Echvi_4299at 5140.686 kb on + strand, within Echvi_4299at 5140.686 kb on + strand, within Echvi_4299at 5140.735 kb on - strandat 5140.756 kb on - strandat 5140.801 kb on + strandat 5140.803 kb on + strandat 5140.839 kb on + strandat 5140.840 kb on - strandat 5140.849 kb on + strandat 5140.849 kb on + strandat 5140.849 kb on + strandat 5140.849 kb on + strandat 5140.850 kb on - strandat 5140.876 kb on + strandat 5140.877 kb on - strandat 5140.878 kb on + strandat 5140.886 kb on + strandat 5140.907 kb on + strand, within Echvi_4300at 5140.907 kb on + strand, within Echvi_4300at 5140.985 kb on + strand, within Echvi_4300at 5141.042 kb on + strand, within Echvi_4300at 5141.042 kb on + strand, within Echvi_4300at 5141.042 kb on + strand, within Echvi_4300at 5141.042 kb on + strand, within Echvi_4300at 5141.043 kb on - strand, within Echvi_4300at 5141.043 kb on - strand, within Echvi_4300at 5141.055 kb on + strand, within Echvi_4300at 5141.055 kb on + strand, within Echvi_4300at 5141.055 kb on + strand, within Echvi_4300at 5141.056 kb on - strand, within Echvi_4300at 5141.067 kb on - strand, within Echvi_4300at 5141.131 kb on + strand, within Echvi_4300at 5141.135 kb on + strand, within Echvi_4300at 5141.136 kb on - strand, within Echvi_4300at 5141.136 kb on - strand, within Echvi_4300at 5141.273 kb on - strand, within Echvi_4300at 5141.279 kb on + strand, within Echvi_4300at 5141.280 kb on - strand, within Echvi_4300at 5141.330 kb on + strand, within Echvi_4300at 5141.330 kb on + strand, within Echvi_4300at 5141.334 kb on + strand, within Echvi_4300at 5141.334 kb on + strand, within Echvi_4300at 5141.334 kb on + strand, within Echvi_4300at 5141.335 kb on - strandat 5141.335 kb on - strandat 5141.371 kb on + strandat 5141.371 kb on + strandat 5141.371 kb on + strandat 5141.372 kb on - strandat 5141.372 kb on - strandat 5141.372 kb on - strandat 5141.372 kb on - strandat 5141.374 kb on - strandat 5141.374 kb on - strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.375 kb on + strandat 5141.376 kb on - strandat 5141.376 kb on - strandat 5141.376 kb on - strandat 5141.376 kb on - strandat 5141.376 kb on - strandat 5141.389 kb on + strandat 5141.389 kb on + strandat 5141.408 kb on - strandat 5141.416 kb on + strandat 5141.417 kb on - strandat 5141.433 kb on + strandat 5141.439 kb on + strand, within Echvi_4301at 5141.440 kb on - strand, within Echvi_4301at 5141.440 kb on - strand, within Echvi_4301at 5141.473 kb on - strand, within Echvi_4301at 5141.478 kb on + strand, within Echvi_4301at 5141.501 kb on - strand, within Echvi_4301at 5141.502 kb on + strand, within Echvi_4301at 5141.503 kb on - strand, within Echvi_4301at 5141.503 kb on - strand, within Echvi_4301at 5141.503 kb on - strand, within Echvi_4301at 5141.527 kb on - strand, within Echvi_4301at 5141.563 kb on + strand, within Echvi_4301at 5141.616 kb on - strand, within Echvi_4301at 5141.617 kb on + strand, within Echvi_4301at 5141.686 kb on + strand, within Echvi_4301

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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5,139,401 + Echvi_4297 0.60 +0.4
5,139,431 + Echvi_4297 0.63 +0.2
5,139,431 + Echvi_4297 0.63 -0.6
5,139,431 + Echvi_4297 0.63 -1.3
5,139,432 - Echvi_4297 0.64 +0.3
5,139,432 - Echvi_4297 0.64 +0.1
5,139,432 - Echvi_4297 0.64 +0.7
5,139,446 + Echvi_4297 0.65 -0.0
5,139,447 - Echvi_4297 0.65 +0.2
5,139,447 - Echvi_4297 0.65 -0.0
5,139,537 + Echvi_4297 0.76 -1.4
5,139,563 - Echvi_4297 0.79 -0.8
5,139,627 + Echvi_4297 0.87 +0.7
5,139,630 - Echvi_4297 0.87 +0.2
5,139,643 + Echvi_4297 0.89 -2.0
5,139,663 - -0.2
5,139,790 - -0.7
5,139,790 - +0.2
5,139,790 - -0.9
5,139,790 - +2.2
5,139,791 + -0.4
5,139,792 - -0.6
5,139,797 + -1.0
5,139,797 + -0.8
5,139,798 - +0.0
5,139,798 - -1.8
5,139,798 - +0.7
5,139,805 + +0.5
5,139,819 + +0.6
5,139,822 + +0.6
5,139,863 + -0.4
5,139,864 - -2.4
5,139,888 + +0.4
5,139,889 - +0.3
5,139,889 - -0.7
5,139,889 - +0.6
5,139,889 - +0.2
5,139,889 - +2.1
5,139,890 + -0.5
5,139,896 + -0.1
5,139,896 + -0.4
5,139,897 - -0.5
5,139,897 - +0.4
5,139,899 + +0.5
5,139,900 - +0.8
5,139,902 - -0.8
5,139,917 + +1.6
5,139,949 + Echvi_4298 0.15 -0.0
5,139,967 + Echvi_4298 0.20 -0.4
5,139,971 - Echvi_4298 0.21 +0.6
5,140,032 + Echvi_4298 0.35 -0.9
5,140,055 + Echvi_4298 0.41 -0.3
5,140,055 + Echvi_4298 0.41 +0.7
5,140,055 + Echvi_4298 0.41 -1.3
5,140,056 - Echvi_4298 0.41 -0.3
5,140,098 + Echvi_4298 0.51 +0.7
5,140,098 + Echvi_4298 0.51 +0.0
5,140,098 + Echvi_4298 0.51 +0.2
5,140,112 + Echvi_4298 0.54 +1.0
5,140,167 - Echvi_4298 0.68 -0.4
5,140,208 + Echvi_4298 0.77 -0.1
5,140,228 - Echvi_4298 0.82 +0.7
5,140,234 - Echvi_4298 0.84 +0.2
5,140,234 - Echvi_4298 0.84 -0.4
5,140,234 - Echvi_4298 0.84 +1.1
5,140,257 + Echvi_4298 0.89 -0.4
5,140,258 - Echvi_4298 0.89 -1.3
5,140,258 - Echvi_4298 0.89 -0.9
5,140,304 + -0.1
5,140,305 - -1.9
5,140,305 - +0.5
5,140,316 - -1.3
5,140,370 + Echvi_4299 0.12 +0.8
5,140,370 + Echvi_4299 0.12 +0.3
5,140,371 - Echvi_4299 0.12 +0.4
5,140,371 - Echvi_4299 0.12 +0.6
5,140,372 + Echvi_4299 0.12 +0.2
5,140,373 - Echvi_4299 0.13 +0.3
5,140,417 + Echvi_4299 0.22 +1.1
5,140,437 + Echvi_4299 0.26 +0.2
5,140,470 + Echvi_4299 0.33 +1.1
5,140,471 - Echvi_4299 0.34 +0.7
5,140,515 - Echvi_4299 0.43 +0.1
5,140,537 + Echvi_4299 0.48 -2.8
5,140,554 - Echvi_4299 0.51 +0.2
5,140,653 + Echvi_4299 0.72 -0.6
5,140,653 + Echvi_4299 0.72 +0.1
5,140,653 + Echvi_4299 0.72 -1.2
5,140,674 + Echvi_4299 0.77 +0.7
5,140,674 + Echvi_4299 0.77 +0.6
5,140,686 + Echvi_4299 0.79 +0.1
5,140,686 + Echvi_4299 0.79 +0.4
5,140,735 - -0.1
5,140,756 - +0.2
5,140,801 + +0.1
5,140,803 + +0.3
5,140,839 + -1.0
5,140,840 - -0.3
5,140,849 + -0.0
5,140,849 + -2.6
5,140,849 + -0.1
5,140,849 + -0.6
5,140,850 - +0.4
5,140,876 + +0.3
5,140,877 - +0.7
5,140,878 + -0.1
5,140,886 + +0.0
5,140,907 + Echvi_4300 0.12 +0.0
5,140,907 + Echvi_4300 0.12 -0.0
5,140,985 + Echvi_4300 0.26 +0.6
5,141,042 + Echvi_4300 0.37 -0.5
5,141,042 + Echvi_4300 0.37 +0.1
5,141,042 + Echvi_4300 0.37 -1.2
5,141,042 + Echvi_4300 0.37 -0.2
5,141,043 - Echvi_4300 0.37 +0.4
5,141,043 - Echvi_4300 0.37 +0.3
5,141,055 + Echvi_4300 0.39 -2.8
5,141,055 + Echvi_4300 0.39 -0.5
5,141,055 + Echvi_4300 0.39 +1.1
5,141,056 - Echvi_4300 0.39 -0.8
5,141,067 - Echvi_4300 0.41 -0.4
5,141,131 + Echvi_4300 0.53 +0.1
5,141,135 + Echvi_4300 0.54 +0.2
5,141,136 - Echvi_4300 0.54 -0.8
5,141,136 - Echvi_4300 0.54 -0.4
5,141,273 - Echvi_4300 0.79 -0.4
5,141,279 + Echvi_4300 0.80 -2.5
5,141,280 - Echvi_4300 0.80 -0.2
5,141,330 + Echvi_4300 0.89 +1.1
5,141,330 + Echvi_4300 0.89 -0.0
5,141,334 + Echvi_4300 0.90 -0.3
5,141,334 + Echvi_4300 0.90 +0.6
5,141,334 + Echvi_4300 0.90 -1.1
5,141,335 - -0.2
5,141,335 - +1.6
5,141,371 + -1.2
5,141,371 + +0.2
5,141,371 + -1.6
5,141,372 - -0.9
5,141,372 - -0.0
5,141,372 - +1.6
5,141,372 - +0.9
5,141,374 - -0.3
5,141,374 - -0.5
5,141,375 + -0.8
5,141,375 + +0.4
5,141,375 + +1.0
5,141,375 + -0.5
5,141,375 + +0.1
5,141,375 + -0.6
5,141,375 + +0.1
5,141,375 + -2.5
5,141,375 + +0.2
5,141,376 - +0.1
5,141,376 - +0.6
5,141,376 - +2.2
5,141,376 - +0.0
5,141,376 - +0.2
5,141,389 + -0.2
5,141,389 + -1.0
5,141,408 - -0.2
5,141,416 + +0.1
5,141,417 - -1.2
5,141,433 + +0.3
5,141,439 + Echvi_4301 0.11 +0.1
5,141,440 - Echvi_4301 0.11 +0.1
5,141,440 - Echvi_4301 0.11 -2.0
5,141,473 - Echvi_4301 0.17 +1.8
5,141,478 + Echvi_4301 0.18 +0.6
5,141,501 - Echvi_4301 0.23 -0.4
5,141,502 + Echvi_4301 0.23 -0.8
5,141,503 - Echvi_4301 0.23 -0.2
5,141,503 - Echvi_4301 0.23 -2.0
5,141,503 - Echvi_4301 0.23 +0.1
5,141,527 - Echvi_4301 0.28 +0.3
5,141,563 + Echvi_4301 0.36 -0.8
5,141,616 - Echvi_4301 0.46 -0.0
5,141,617 + Echvi_4301 0.46 -0.2
5,141,686 + Echvi_4301 0.60 -0.4

Or see this region's nucleotide sequence