Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4025

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4024 and Echvi_4025 are separated by 14 nucleotidesEchvi_4025 and Echvi_4026 are separated by 60 nucleotidesEchvi_4026 and Echvi_4027 are separated by 78 nucleotides Echvi_4024: Echvi_4024 - hypothetical protein, at 4,818,517 to 4,819,608 _4024 Echvi_4025: Echvi_4025 - hypothetical protein, at 4,819,623 to 4,819,991 _4025 Echvi_4026: Echvi_4026 - hypothetical protein, at 4,820,052 to 4,820,852 _4026 Echvi_4027: Echvi_4027 - hypothetical protein, at 4,820,931 to 4,822,271 _4027 Position (kb) 4819 4820Strain fitness (log2 ratio) -2 -1 0 1 2at 4818.635 kb on - strand, within Echvi_4024at 4818.635 kb on - strand, within Echvi_4024at 4818.688 kb on + strand, within Echvi_4024at 4818.850 kb on + strand, within Echvi_4024at 4818.851 kb on - strand, within Echvi_4024at 4818.884 kb on - strand, within Echvi_4024at 4819.076 kb on - strand, within Echvi_4024at 4819.237 kb on + strand, within Echvi_4024at 4819.253 kb on + strand, within Echvi_4024at 4819.317 kb on + strand, within Echvi_4024at 4819.317 kb on + strand, within Echvi_4024at 4819.318 kb on - strand, within Echvi_4024at 4819.321 kb on - strand, within Echvi_4024at 4819.349 kb on + strand, within Echvi_4024at 4819.604 kb on + strandat 4819.630 kb on + strandat 4819.654 kb on + strandat 4819.654 kb on + strandat 4819.763 kb on - strand, within Echvi_4025at 4819.790 kb on + strand, within Echvi_4025at 4819.858 kb on + strand, within Echvi_4025at 4819.863 kb on + strand, within Echvi_4025at 4819.898 kb on + strand, within Echvi_4025at 4819.937 kb on + strand, within Echvi_4025at 4820.023 kb on - strandat 4820.023 kb on - strandat 4820.023 kb on - strandat 4820.042 kb on - strandat 4820.065 kb on + strandat 4820.077 kb on + strandat 4820.080 kb on + strandat 4820.115 kb on - strandat 4820.171 kb on + strand, within Echvi_4026at 4820.173 kb on + strand, within Echvi_4026at 4820.173 kb on + strand, within Echvi_4026at 4820.173 kb on + strand, within Echvi_4026at 4820.257 kb on + strand, within Echvi_4026at 4820.257 kb on + strand, within Echvi_4026at 4820.257 kb on + strand, within Echvi_4026at 4820.258 kb on - strand, within Echvi_4026at 4820.258 kb on - strand, within Echvi_4026at 4820.258 kb on - strand, within Echvi_4026at 4820.304 kb on - strand, within Echvi_4026at 4820.304 kb on - strand, within Echvi_4026at 4820.304 kb on - strand, within Echvi_4026at 4820.307 kb on + strand, within Echvi_4026at 4820.308 kb on - strand, within Echvi_4026at 4820.325 kb on + strand, within Echvi_4026at 4820.326 kb on - strand, within Echvi_4026at 4820.430 kb on + strand, within Echvi_4026at 4820.430 kb on + strand, within Echvi_4026at 4820.431 kb on - strand, within Echvi_4026at 4820.431 kb on - strand, within Echvi_4026at 4820.432 kb on + strand, within Echvi_4026at 4820.432 kb on + strand, within Echvi_4026at 4820.432 kb on + strand, within Echvi_4026at 4820.432 kb on + strand, within Echvi_4026at 4820.458 kb on + strand, within Echvi_4026at 4820.469 kb on + strand, within Echvi_4026at 4820.470 kb on - strand, within Echvi_4026at 4820.471 kb on + strand, within Echvi_4026at 4820.472 kb on - strand, within Echvi_4026at 4820.504 kb on - strand, within Echvi_4026at 4820.526 kb on + strand, within Echvi_4026at 4820.553 kb on + strand, within Echvi_4026at 4820.647 kb on + strand, within Echvi_4026at 4820.729 kb on - strand, within Echvi_4026at 4820.775 kb on + strandat 4820.775 kb on + strandat 4820.776 kb on - strandat 4820.826 kb on + strandat 4820.827 kb on - strandat 4820.827 kb on - strandat 4820.851 kb on - strandat 4820.873 kb on - strandat 4820.986 kb on + strandat 4820.986 kb on + strandat 4820.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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4,818,635 - Echvi_4024 0.11 +2.0
4,818,635 - Echvi_4024 0.11 +2.1
4,818,688 + Echvi_4024 0.16 +0.7
4,818,850 + Echvi_4024 0.30 +1.9
4,818,851 - Echvi_4024 0.31 -0.1
4,818,884 - Echvi_4024 0.34 -0.1
4,819,076 - Echvi_4024 0.51 -2.2
4,819,237 + Echvi_4024 0.66 +1.5
4,819,253 + Echvi_4024 0.67 -0.4
4,819,317 + Echvi_4024 0.73 +0.3
4,819,317 + Echvi_4024 0.73 +2.3
4,819,318 - Echvi_4024 0.73 -0.3
4,819,321 - Echvi_4024 0.74 +1.2
4,819,349 + Echvi_4024 0.76 -0.2
4,819,604 + -0.6
4,819,630 + -0.1
4,819,654 + -1.0
4,819,654 + -0.7
4,819,763 - Echvi_4025 0.38 +2.2
4,819,790 + Echvi_4025 0.45 +1.7
4,819,858 + Echvi_4025 0.64 +0.9
4,819,863 + Echvi_4025 0.65 +0.9
4,819,898 + Echvi_4025 0.75 +1.5
4,819,937 + Echvi_4025 0.85 +1.2
4,820,023 - -0.4
4,820,023 - -1.1
4,820,023 - -0.9
4,820,042 - -1.7
4,820,065 + +0.5
4,820,077 + -1.3
4,820,080 + +0.0
4,820,115 - +0.5
4,820,171 + Echvi_4026 0.15 -0.5
4,820,173 + Echvi_4026 0.15 +0.1
4,820,173 + Echvi_4026 0.15 +0.0
4,820,173 + Echvi_4026 0.15 -1.9
4,820,257 + Echvi_4026 0.26 +0.8
4,820,257 + Echvi_4026 0.26 +0.2
4,820,257 + Echvi_4026 0.26 -0.8
4,820,258 - Echvi_4026 0.26 +0.1
4,820,258 - Echvi_4026 0.26 -0.5
4,820,258 - Echvi_4026 0.26 -0.1
4,820,304 - Echvi_4026 0.31 +0.4
4,820,304 - Echvi_4026 0.31 +1.5
4,820,304 - Echvi_4026 0.31 +0.4
4,820,307 + Echvi_4026 0.32 -0.2
4,820,308 - Echvi_4026 0.32 -0.4
4,820,325 + Echvi_4026 0.34 +0.7
4,820,326 - Echvi_4026 0.34 +0.0
4,820,430 + Echvi_4026 0.47 -0.3
4,820,430 + Echvi_4026 0.47 -0.8
4,820,431 - Echvi_4026 0.47 -1.1
4,820,431 - Echvi_4026 0.47 +0.2
4,820,432 + Echvi_4026 0.47 -0.3
4,820,432 + Echvi_4026 0.47 -1.3
4,820,432 + Echvi_4026 0.47 -0.1
4,820,432 + Echvi_4026 0.47 +0.1
4,820,458 + Echvi_4026 0.51 -0.2
4,820,469 + Echvi_4026 0.52 -0.6
4,820,470 - Echvi_4026 0.52 +1.5
4,820,471 + Echvi_4026 0.52 +0.5
4,820,472 - Echvi_4026 0.52 +0.3
4,820,504 - Echvi_4026 0.56 -0.2
4,820,526 + Echvi_4026 0.59 -1.6
4,820,553 + Echvi_4026 0.63 -1.2
4,820,647 + Echvi_4026 0.74 -0.1
4,820,729 - Echvi_4026 0.85 +1.0
4,820,775 + +0.1
4,820,775 + +0.8
4,820,776 - +2.3
4,820,826 + -1.0
4,820,827 - +0.2
4,820,827 - -1.4
4,820,851 - -0.1
4,820,873 - -0.6
4,820,986 + +0.3
4,820,986 + -0.6
4,820,987 - -1.5

Or see this region's nucleotide sequence