Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2824

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2823 and Echvi_2824 overlap by 1 nucleotidesEchvi_2824 and Echvi_2825 overlap by 4 nucleotides Echvi_2823: Echvi_2823 - Predicted Zn-dependent peptidases, at 3,378,730 to 3,380,004 _2823 Echvi_2824: Echvi_2824 - hypothetical protein, at 3,380,004 to 3,381,221 _2824 Echvi_2825: Echvi_2825 - Peptidase family C25., at 3,381,218 to 3,384,502 _2825 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3379.012 kb on + strand, within Echvi_2823at 3379.012 kb on + strand, within Echvi_2823at 3379.013 kb on - strand, within Echvi_2823at 3379.013 kb on - strand, within Echvi_2823at 3379.013 kb on - strand, within Echvi_2823at 3379.013 kb on - strand, within Echvi_2823at 3379.026 kb on - strand, within Echvi_2823at 3379.059 kb on - strand, within Echvi_2823at 3379.092 kb on - strand, within Echvi_2823at 3379.105 kb on - strand, within Echvi_2823at 3379.105 kb on - strand, within Echvi_2823at 3379.106 kb on + strand, within Echvi_2823at 3379.106 kb on + strand, within Echvi_2823at 3379.300 kb on - strand, within Echvi_2823at 3379.306 kb on + strand, within Echvi_2823at 3379.391 kb on - strand, within Echvi_2823at 3379.424 kb on + strand, within Echvi_2823at 3379.425 kb on - strand, within Echvi_2823at 3379.456 kb on + strand, within Echvi_2823at 3379.457 kb on - strand, within Echvi_2823at 3379.504 kb on + strand, within Echvi_2823at 3379.557 kb on + strand, within Echvi_2823at 3379.557 kb on + strand, within Echvi_2823at 3379.558 kb on - strand, within Echvi_2823at 3379.560 kb on + strand, within Echvi_2823at 3379.561 kb on - strand, within Echvi_2823at 3379.612 kb on + strand, within Echvi_2823at 3379.613 kb on - strand, within Echvi_2823at 3379.613 kb on - strand, within Echvi_2823at 3379.635 kb on + strand, within Echvi_2823at 3379.635 kb on + strand, within Echvi_2823at 3379.635 kb on + strand, within Echvi_2823at 3379.635 kb on + strand, within Echvi_2823at 3379.636 kb on - strand, within Echvi_2823at 3379.636 kb on - strand, within Echvi_2823at 3379.730 kb on + strand, within Echvi_2823at 3379.731 kb on - strand, within Echvi_2823at 3379.731 kb on - strand, within Echvi_2823at 3379.768 kb on - strand, within Echvi_2823at 3379.832 kb on - strand, within Echvi_2823at 3379.901 kb on + strandat 3379.903 kb on + strandat 3379.982 kb on - strandat 3380.005 kb on + strandat 3380.005 kb on + strandat 3380.005 kb on + strandat 3380.016 kb on - strandat 3380.018 kb on + strandat 3380.018 kb on + strandat 3380.019 kb on - strandat 3380.019 kb on - strandat 3380.019 kb on - strandat 3380.019 kb on - strandat 3380.020 kb on + strandat 3380.021 kb on - strandat 3380.021 kb on - strandat 3380.037 kb on + strandat 3380.037 kb on + strandat 3380.037 kb on + strandat 3380.038 kb on - strandat 3380.038 kb on - strandat 3380.038 kb on - strandat 3380.038 kb on - strandat 3380.080 kb on + strandat 3380.080 kb on + strandat 3380.080 kb on + strandat 3380.081 kb on - strandat 3380.081 kb on - strandat 3380.134 kb on + strand, within Echvi_2824at 3380.134 kb on + strand, within Echvi_2824at 3380.135 kb on - strand, within Echvi_2824at 3380.170 kb on + strand, within Echvi_2824at 3380.171 kb on - strand, within Echvi_2824at 3380.171 kb on - strand, within Echvi_2824at 3380.171 kb on - strand, within Echvi_2824at 3380.200 kb on + strand, within Echvi_2824at 3380.201 kb on - strand, within Echvi_2824at 3380.382 kb on - strand, within Echvi_2824at 3380.386 kb on + strand, within Echvi_2824at 3380.386 kb on + strand, within Echvi_2824at 3380.386 kb on + strand, within Echvi_2824at 3380.387 kb on - strand, within Echvi_2824at 3380.409 kb on + strand, within Echvi_2824at 3380.409 kb on + strand, within Echvi_2824at 3380.410 kb on - strand, within Echvi_2824at 3380.500 kb on + strand, within Echvi_2824at 3380.500 kb on + strand, within Echvi_2824at 3380.500 kb on + strand, within Echvi_2824at 3380.500 kb on + strand, within Echvi_2824at 3380.500 kb on + strand, within Echvi_2824at 3380.501 kb on - strand, within Echvi_2824at 3380.501 kb on - strand, within Echvi_2824at 3380.522 kb on + strand, within Echvi_2824at 3380.522 kb on + strand, within Echvi_2824at 3380.523 kb on - strand, within Echvi_2824at 3380.523 kb on - strand, within Echvi_2824at 3380.523 kb on - strand, within Echvi_2824at 3380.524 kb on + strand, within Echvi_2824at 3380.525 kb on - strand, within Echvi_2824at 3380.525 kb on - strand, within Echvi_2824at 3380.543 kb on + strand, within Echvi_2824at 3380.544 kb on - strand, within Echvi_2824at 3380.553 kb on - strand, within Echvi_2824at 3380.620 kb on - strand, within Echvi_2824at 3380.631 kb on + strand, within Echvi_2824at 3380.631 kb on + strand, within Echvi_2824at 3380.737 kb on - strand, within Echvi_2824at 3380.749 kb on + strand, within Echvi_2824at 3380.780 kb on + strand, within Echvi_2824at 3380.792 kb on + strand, within Echvi_2824at 3380.834 kb on + strand, within Echvi_2824at 3380.835 kb on - strand, within Echvi_2824at 3380.850 kb on + strand, within Echvi_2824at 3380.882 kb on + strand, within Echvi_2824at 3380.882 kb on + strand, within Echvi_2824at 3380.882 kb on + strand, within Echvi_2824at 3380.882 kb on + strand, within Echvi_2824at 3380.882 kb on + strand, within Echvi_2824at 3380.884 kb on + strand, within Echvi_2824at 3380.885 kb on - strand, within Echvi_2824at 3380.901 kb on + strand, within Echvi_2824at 3380.902 kb on - strand, within Echvi_2824at 3380.942 kb on - strand, within Echvi_2824at 3381.180 kb on + strandat 3381.180 kb on + strandat 3381.189 kb on - strandat 3381.202 kb on + strandat 3381.226 kb on + strandat 3381.227 kb on - strandat 3381.227 kb on - strandat 3381.227 kb on - strandat 3381.227 kb on - strandat 3381.230 kb on + strandat 3381.292 kb on + strandat 3381.292 kb on + strandat 3381.292 kb on + strandat 3381.293 kb on - strandat 3381.293 kb on - strandat 3381.294 kb on + strandat 3381.294 kb on + strandat 3381.394 kb on - strandat 3381.416 kb on - strandat 3381.437 kb on + strandat 3381.464 kb on + strandat 3381.505 kb on + strandat 3381.523 kb on + strandat 3381.596 kb on + strand, within Echvi_2825at 3381.596 kb on + strand, within Echvi_2825at 3381.649 kb on + strand, within Echvi_2825at 3381.650 kb on - strand, within Echvi_2825at 3381.650 kb on - strand, within Echvi_2825at 3381.650 kb on - strand, within Echvi_2825at 3381.660 kb on + strand, within Echvi_2825at 3381.660 kb on + strand, within Echvi_2825at 3381.665 kb on - strand, within Echvi_2825at 3381.665 kb on - strand, within Echvi_2825at 3381.684 kb on + strand, within Echvi_2825at 3381.684 kb on + strand, within Echvi_2825at 3381.684 kb on + strand, within Echvi_2825at 3381.685 kb on - strand, within Echvi_2825at 3381.685 kb on - strand, within Echvi_2825at 3381.695 kb on + strand, within Echvi_2825at 3381.696 kb on - strand, within Echvi_2825at 3381.700 kb on + strand, within Echvi_2825at 3381.802 kb on + strand, within Echvi_2825at 3381.920 kb on + strand, within Echvi_2825at 3381.935 kb on - strand, within Echvi_2825at 3381.962 kb on + strand, within Echvi_2825at 3381.963 kb on - strand, within Echvi_2825at 3381.963 kb on - strand, within Echvi_2825at 3381.964 kb on + strand, within Echvi_2825at 3381.964 kb on + strand, within Echvi_2825at 3381.965 kb on - strand, within Echvi_2825at 3381.965 kb on - strand, within Echvi_2825at 3382.133 kb on + strand, within Echvi_2825at 3382.168 kb on + strand, within Echvi_2825

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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3,379,012 + Echvi_2823 0.22 +1.0
3,379,012 + Echvi_2823 0.22 +0.2
3,379,013 - Echvi_2823 0.22 -0.8
3,379,013 - Echvi_2823 0.22 -0.3
3,379,013 - Echvi_2823 0.22 -0.2
3,379,013 - Echvi_2823 0.22 -0.4
3,379,026 - Echvi_2823 0.23 +0.2
3,379,059 - Echvi_2823 0.26 +2.5
3,379,092 - Echvi_2823 0.28 +0.8
3,379,105 - Echvi_2823 0.29 +0.2
3,379,105 - Echvi_2823 0.29 -0.1
3,379,106 + Echvi_2823 0.29 -1.8
3,379,106 + Echvi_2823 0.29 -0.7
3,379,300 - Echvi_2823 0.45 -1.6
3,379,306 + Echvi_2823 0.45 -1.0
3,379,391 - Echvi_2823 0.52 -0.3
3,379,424 + Echvi_2823 0.54 -0.3
3,379,425 - Echvi_2823 0.55 -2.2
3,379,456 + Echvi_2823 0.57 +0.0
3,379,457 - Echvi_2823 0.57 -1.3
3,379,504 + Echvi_2823 0.61 -0.2
3,379,557 + Echvi_2823 0.65 -0.2
3,379,557 + Echvi_2823 0.65 -1.3
3,379,558 - Echvi_2823 0.65 +0.6
3,379,560 + Echvi_2823 0.65 +1.5
3,379,561 - Echvi_2823 0.65 +1.0
3,379,612 + Echvi_2823 0.69 +3.8
3,379,613 - Echvi_2823 0.69 -0.7
3,379,613 - Echvi_2823 0.69 +0.3
3,379,635 + Echvi_2823 0.71 -0.6
3,379,635 + Echvi_2823 0.71 -0.1
3,379,635 + Echvi_2823 0.71 +0.3
3,379,635 + Echvi_2823 0.71 -0.8
3,379,636 - Echvi_2823 0.71 +1.1
3,379,636 - Echvi_2823 0.71 +1.8
3,379,730 + Echvi_2823 0.78 -0.4
3,379,731 - Echvi_2823 0.79 -1.0
3,379,731 - Echvi_2823 0.79 -0.4
3,379,768 - Echvi_2823 0.81 -1.1
3,379,832 - Echvi_2823 0.86 +0.1
3,379,901 + +0.7
3,379,903 + +0.3
3,379,982 - +0.5
3,380,005 + +0.9
3,380,005 + +1.4
3,380,005 + +0.7
3,380,016 - +2.2
3,380,018 + +0.7
3,380,018 + +0.9
3,380,019 - -0.7
3,380,019 - -0.3
3,380,019 - +1.2
3,380,019 - +0.2
3,380,020 + +0.7
3,380,021 - +1.2
3,380,021 - +1.2
3,380,037 + +0.8
3,380,037 + +0.6
3,380,037 + +0.9
3,380,038 - +1.2
3,380,038 - +1.6
3,380,038 - +1.1
3,380,038 - +1.8
3,380,080 + +1.6
3,380,080 + +0.5
3,380,080 + +0.8
3,380,081 - +1.5
3,380,081 - +1.5
3,380,134 + Echvi_2824 0.11 +0.8
3,380,134 + Echvi_2824 0.11 +0.7
3,380,135 - Echvi_2824 0.11 +0.4
3,380,170 + Echvi_2824 0.14 +1.4
3,380,171 - Echvi_2824 0.14 +1.5
3,380,171 - Echvi_2824 0.14 +1.1
3,380,171 - Echvi_2824 0.14 +1.4
3,380,200 + Echvi_2824 0.16 +1.4
3,380,201 - Echvi_2824 0.16 +0.6
3,380,382 - Echvi_2824 0.31 +1.1
3,380,386 + Echvi_2824 0.31 +2.7
3,380,386 + Echvi_2824 0.31 +2.4
3,380,386 + Echvi_2824 0.31 +0.7
3,380,387 - Echvi_2824 0.31 +1.0
3,380,409 + Echvi_2824 0.33 +0.5
3,380,409 + Echvi_2824 0.33 +0.4
3,380,410 - Echvi_2824 0.33 +1.0
3,380,500 + Echvi_2824 0.41 +1.3
3,380,500 + Echvi_2824 0.41 +0.6
3,380,500 + Echvi_2824 0.41 +1.0
3,380,500 + Echvi_2824 0.41 +1.1
3,380,500 + Echvi_2824 0.41 +0.9
3,380,501 - Echvi_2824 0.41 +1.5
3,380,501 - Echvi_2824 0.41 +1.0
3,380,522 + Echvi_2824 0.43 +1.0
3,380,522 + Echvi_2824 0.43 +0.4
3,380,523 - Echvi_2824 0.43 +1.4
3,380,523 - Echvi_2824 0.43 +1.6
3,380,523 - Echvi_2824 0.43 +0.1
3,380,524 + Echvi_2824 0.43 +1.0
3,380,525 - Echvi_2824 0.43 +2.1
3,380,525 - Echvi_2824 0.43 +0.8
3,380,543 + Echvi_2824 0.44 +1.4
3,380,544 - Echvi_2824 0.44 +1.3
3,380,553 - Echvi_2824 0.45 +1.0
3,380,620 - Echvi_2824 0.51 +1.2
3,380,631 + Echvi_2824 0.51 +1.1
3,380,631 + Echvi_2824 0.51 +1.2
3,380,737 - Echvi_2824 0.60 +1.7
3,380,749 + Echvi_2824 0.61 +0.9
3,380,780 + Echvi_2824 0.64 +0.9
3,380,792 + Echvi_2824 0.65 -0.0
3,380,834 + Echvi_2824 0.68 +2.2
3,380,835 - Echvi_2824 0.68 +1.1
3,380,850 + Echvi_2824 0.69 +1.0
3,380,882 + Echvi_2824 0.72 +0.9
3,380,882 + Echvi_2824 0.72 +0.9
3,380,882 + Echvi_2824 0.72 +1.4
3,380,882 + Echvi_2824 0.72 +1.5
3,380,882 + Echvi_2824 0.72 +1.5
3,380,884 + Echvi_2824 0.72 +1.1
3,380,885 - Echvi_2824 0.72 +1.1
3,380,901 + Echvi_2824 0.74 +1.6
3,380,902 - Echvi_2824 0.74 +1.6
3,380,942 - Echvi_2824 0.77 +1.5
3,381,180 + +1.8
3,381,180 + +0.6
3,381,189 - +0.4
3,381,202 + +1.3
3,381,226 + +0.0
3,381,227 - -0.8
3,381,227 - +0.2
3,381,227 - -0.8
3,381,227 - +0.9
3,381,230 + +1.1
3,381,292 + +0.1
3,381,292 + +0.9
3,381,292 + +0.8
3,381,293 - +0.7
3,381,293 - -1.2
3,381,294 + +0.8
3,381,294 + +0.8
3,381,394 - -0.1
3,381,416 - +0.8
3,381,437 + -0.2
3,381,464 + -0.5
3,381,505 + +0.2
3,381,523 + -0.1
3,381,596 + Echvi_2825 0.12 -1.9
3,381,596 + Echvi_2825 0.12 +0.3
3,381,649 + Echvi_2825 0.13 -0.2
3,381,650 - Echvi_2825 0.13 +1.0
3,381,650 - Echvi_2825 0.13 +0.5
3,381,650 - Echvi_2825 0.13 -1.4
3,381,660 + Echvi_2825 0.13 +0.4
3,381,660 + Echvi_2825 0.13 -0.3
3,381,665 - Echvi_2825 0.14 +0.5
3,381,665 - Echvi_2825 0.14 +0.5
3,381,684 + Echvi_2825 0.14 +0.3
3,381,684 + Echvi_2825 0.14 -1.1
3,381,684 + Echvi_2825 0.14 +0.2
3,381,685 - Echvi_2825 0.14 -0.8
3,381,685 - Echvi_2825 0.14 +0.5
3,381,695 + Echvi_2825 0.15 +0.2
3,381,696 - Echvi_2825 0.15 +0.5
3,381,700 + Echvi_2825 0.15 -0.6
3,381,802 + Echvi_2825 0.18 +0.1
3,381,920 + Echvi_2825 0.21 -0.5
3,381,935 - Echvi_2825 0.22 +0.2
3,381,962 + Echvi_2825 0.23 -0.4
3,381,963 - Echvi_2825 0.23 -0.2
3,381,963 - Echvi_2825 0.23 -0.4
3,381,964 + Echvi_2825 0.23 +0.0
3,381,964 + Echvi_2825 0.23 +0.5
3,381,965 - Echvi_2825 0.23 -0.8
3,381,965 - Echvi_2825 0.23 -0.2
3,382,133 + Echvi_2825 0.28 +0.3
3,382,168 + Echvi_2825 0.29 +0.1

Or see this region's nucleotide sequence