Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0842

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0841 and Echvi_0842 are separated by 281 nucleotidesEchvi_0842 and Echvi_0843 are separated by 34 nucleotidesEchvi_0843 and Echvi_0844 are separated by 596 nucleotides Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307 _0841 Echvi_0842: Echvi_0842 - Membrane proteins related to metalloendopeptidases, at 962,589 to 963,887 _0842 Echvi_0843: Echvi_0843 - hypothetical protein, at 963,922 to 964,029 _0843 Echvi_0844: Echvi_0844 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 964,626 to 966,128 _0844 Position (kb) 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.345 kb on - strandat 962.365 kb on - strandat 962.367 kb on + strandat 962.368 kb on - strandat 962.368 kb on - strandat 962.371 kb on - strandat 962.371 kb on - strandat 962.371 kb on - strandat 962.402 kb on + strandat 962.403 kb on - strandat 962.403 kb on - strandat 962.424 kb on + strandat 962.510 kb on + strandat 962.515 kb on + strandat 962.516 kb on - strandat 962.519 kb on + strandat 962.519 kb on + strandat 962.519 kb on + strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.527 kb on - strandat 962.550 kb on + strandat 962.550 kb on + strandat 962.618 kb on + strandat 962.618 kb on + strandat 962.619 kb on - strandat 962.653 kb on - strandat 962.665 kb on + strandat 962.665 kb on + strandat 962.687 kb on - strandat 962.698 kb on + strandat 962.746 kb on + strand, within Echvi_0842at 962.764 kb on + strand, within Echvi_0842at 962.765 kb on - strand, within Echvi_0842at 962.782 kb on + strand, within Echvi_0842at 962.783 kb on - strand, within Echvi_0842at 962.783 kb on - strand, within Echvi_0842at 962.795 kb on - strand, within Echvi_0842at 962.839 kb on + strand, within Echvi_0842at 962.839 kb on + strand, within Echvi_0842at 962.840 kb on - strand, within Echvi_0842at 962.840 kb on - strand, within Echvi_0842at 962.897 kb on + strand, within Echvi_0842at 962.897 kb on + strand, within Echvi_0842at 962.898 kb on - strand, within Echvi_0842at 962.926 kb on + strand, within Echvi_0842at 962.927 kb on - strand, within Echvi_0842at 963.000 kb on + strand, within Echvi_0842at 963.001 kb on - strand, within Echvi_0842at 963.024 kb on + strand, within Echvi_0842at 963.024 kb on + strand, within Echvi_0842at 963.025 kb on - strand, within Echvi_0842at 963.027 kb on - strand, within Echvi_0842at 963.088 kb on + strand, within Echvi_0842at 963.088 kb on + strand, within Echvi_0842at 963.090 kb on + strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.151 kb on - strand, within Echvi_0842at 963.259 kb on + strand, within Echvi_0842at 963.259 kb on + strand, within Echvi_0842at 963.264 kb on + strand, within Echvi_0842at 963.289 kb on - strand, within Echvi_0842at 963.291 kb on + strand, within Echvi_0842at 963.354 kb on - strand, within Echvi_0842at 963.441 kb on + strand, within Echvi_0842at 963.442 kb on - strand, within Echvi_0842at 963.442 kb on - strand, within Echvi_0842at 963.466 kb on - strand, within Echvi_0842at 963.509 kb on + strand, within Echvi_0842at 963.510 kb on - strand, within Echvi_0842at 963.510 kb on - strand, within Echvi_0842at 963.528 kb on + strand, within Echvi_0842at 963.549 kb on + strand, within Echvi_0842at 963.549 kb on + strand, within Echvi_0842at 963.550 kb on - strand, within Echvi_0842at 963.559 kb on + strand, within Echvi_0842at 963.566 kb on + strand, within Echvi_0842at 963.567 kb on - strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.576 kb on + strand, within Echvi_0842at 963.577 kb on - strand, within Echvi_0842at 963.578 kb on + strand, within Echvi_0842at 963.589 kb on - strand, within Echvi_0842at 963.589 kb on - strand, within Echvi_0842at 963.860 kb on + strandat 963.861 kb on - strandat 963.885 kb on + strandat 963.885 kb on + strandat 963.885 kb on + strandat 963.886 kb on - strandat 964.121 kb on + strandat 964.121 kb on + strandat 964.121 kb on + strandat 964.121 kb on + strandat 964.122 kb on - strandat 964.122 kb on - strandat 964.124 kb on + strandat 964.125 kb on - strandat 964.132 kb on + strandat 964.133 kb on - strandat 964.143 kb on + strandat 964.158 kb on + strandat 964.190 kb on - strandat 964.190 kb on - strandat 964.264 kb on + strandat 964.264 kb on + strandat 964.264 kb on + strandat 964.264 kb on + strandat 964.287 kb on - strandat 964.328 kb on + strandat 964.362 kb on + strandat 964.362 kb on + strandat 964.432 kb on + strandat 964.469 kb on - strandat 964.472 kb on + strandat 964.472 kb on + strandat 964.475 kb on + strandat 964.479 kb on + strandat 964.482 kb on + strandat 964.500 kb on + strandat 964.580 kb on + strandat 964.581 kb on - strandat 964.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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962,345 - -0.6
962,365 - -0.1
962,367 + -0.2
962,368 - -0.3
962,368 - +0.4
962,371 - -1.2
962,371 - -0.5
962,371 - -2.0
962,402 + +0.3
962,403 - +0.2
962,403 - +0.8
962,424 + +0.4
962,510 + -0.2
962,515 + -0.1
962,516 - -0.8
962,519 + -0.6
962,519 + +0.0
962,519 + +1.0
962,520 - -1.1
962,520 - +1.8
962,520 - +0.5
962,520 - +0.1
962,527 - -0.8
962,550 + -1.6
962,550 + +0.3
962,618 + -1.3
962,618 + +0.5
962,619 - -1.2
962,653 - +0.8
962,665 + +0.6
962,665 + -0.8
962,687 - +0.3
962,698 + +0.0
962,746 + Echvi_0842 0.12 -0.2
962,764 + Echvi_0842 0.13 -0.7
962,765 - Echvi_0842 0.14 +2.5
962,782 + Echvi_0842 0.15 -0.6
962,783 - Echvi_0842 0.15 +0.3
962,783 - Echvi_0842 0.15 -1.2
962,795 - Echvi_0842 0.16 +0.4
962,839 + Echvi_0842 0.19 -3.1
962,839 + Echvi_0842 0.19 +0.1
962,840 - Echvi_0842 0.19 -2.6
962,840 - Echvi_0842 0.19 -0.2
962,897 + Echvi_0842 0.24 -1.6
962,897 + Echvi_0842 0.24 -1.1
962,898 - Echvi_0842 0.24 -2.1
962,926 + Echvi_0842 0.26 -0.1
962,927 - Echvi_0842 0.26 -1.0
963,000 + Echvi_0842 0.32 +0.5
963,001 - Echvi_0842 0.32 -0.7
963,024 + Echvi_0842 0.33 -0.6
963,024 + Echvi_0842 0.33 -0.4
963,025 - Echvi_0842 0.34 -0.4
963,027 - Echvi_0842 0.34 -1.2
963,088 + Echvi_0842 0.38 -1.0
963,088 + Echvi_0842 0.38 +1.2
963,090 + Echvi_0842 0.39 -2.3
963,091 - Echvi_0842 0.39 -0.1
963,091 - Echvi_0842 0.39 +1.5
963,091 - Echvi_0842 0.39 +0.3
963,091 - Echvi_0842 0.39 -0.2
963,151 - Echvi_0842 0.43 +0.2
963,259 + Echvi_0842 0.52 -1.0
963,259 + Echvi_0842 0.52 -1.1
963,264 + Echvi_0842 0.52 -1.1
963,289 - Echvi_0842 0.54 -1.1
963,291 + Echvi_0842 0.54 -0.2
963,354 - Echvi_0842 0.59 +0.5
963,441 + Echvi_0842 0.66 -0.3
963,442 - Echvi_0842 0.66 -1.1
963,442 - Echvi_0842 0.66 -0.8
963,466 - Echvi_0842 0.68 +0.1
963,509 + Echvi_0842 0.71 -1.4
963,510 - Echvi_0842 0.71 -0.1
963,510 - Echvi_0842 0.71 -1.9
963,528 + Echvi_0842 0.72 -1.6
963,549 + Echvi_0842 0.74 -0.0
963,549 + Echvi_0842 0.74 -1.1
963,550 - Echvi_0842 0.74 -0.2
963,559 + Echvi_0842 0.75 -0.6
963,566 + Echvi_0842 0.75 -1.4
963,567 - Echvi_0842 0.75 +1.2
963,576 + Echvi_0842 0.76 +0.3
963,576 + Echvi_0842 0.76 -0.4
963,576 + Echvi_0842 0.76 -0.4
963,576 + Echvi_0842 0.76 +0.1
963,576 + Echvi_0842 0.76 +0.2
963,576 + Echvi_0842 0.76 -0.4
963,576 + Echvi_0842 0.76 -0.6
963,576 + Echvi_0842 0.76 +1.8
963,576 + Echvi_0842 0.76 -0.5
963,577 - Echvi_0842 0.76 -0.8
963,578 + Echvi_0842 0.76 +0.2
963,589 - Echvi_0842 0.77 +1.2
963,589 - Echvi_0842 0.77 -1.2
963,860 + -0.4
963,861 - -1.4
963,885 + -1.1
963,885 + +0.1
963,885 + -0.2
963,886 - +0.2
964,121 + +0.1
964,121 + +1.8
964,121 + +0.8
964,121 + +0.4
964,122 - -1.3
964,122 - -0.2
964,124 + +0.3
964,125 - -2.0
964,132 + +0.5
964,133 - -1.2
964,143 + +0.7
964,158 + -1.4
964,190 - -0.1
964,190 - -0.3
964,264 + -0.3
964,264 + -0.5
964,264 + +0.9
964,264 + +0.2
964,287 - +0.4
964,328 + -0.7
964,362 + -0.4
964,362 + -0.5
964,432 + -0.8
964,469 - +0.6
964,472 + -0.2
964,472 + -0.5
964,475 + -0.9
964,479 + -0.2
964,482 + +0.7
964,500 + -0.1
964,580 + -1.2
964,581 - -0.2
964,595 + -0.6

Or see this region's nucleotide sequence