Strain Fitness in Agrobacterium fabrum C58 around Atu2103

Experiment: L-Sorbose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu2102 and Atu2103 are separated by 14 nucleotidesAtu2103 and Atu2104 are separated by 705 nucleotides Atu2102: Atu2102 - S-adenosyl methionine-dependent methytransferase, at 2,067,546 to 2,068,571 Atu2102 Atu2103: Atu2103 - hypothetical protein, at 2,068,586 to 2,069,026 Atu2103 Atu2104: Atu2104 - hypothetical protein, at 2,069,732 to 2,070,133 Atu2104 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1at 2069.075 kb on - strandat 2069.295 kb on - strandat 2069.443 kb on + strandat 2069.443 kb on + strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.487 kb on + strandat 2069.487 kb on + strandat 2069.495 kb on - strandat 2069.506 kb on + strandat 2069.523 kb on + strandat 2069.524 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strandat 2069.629 kb on + strandat 2069.657 kb on + strandat 2069.912 kb on - strand, within Atu2104

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
remove
2,069,075 - -1.9
2,069,295 - +0.2
2,069,443 + +0.5
2,069,443 + +0.0
2,069,451 - +0.1
2,069,451 - +0.2
2,069,451 - +0.2
2,069,451 - +0.7
2,069,487 + +0.1
2,069,487 + -0.1
2,069,495 - +0.2
2,069,506 + +0.1
2,069,523 + -0.6
2,069,524 - -0.2
2,069,534 - -0.1
2,069,534 - +0.7
2,069,534 - +0.1
2,069,534 - -0.1
2,069,629 + +0.1
2,069,657 + +0.4
2,069,912 - Atu2104 0.45 +1.6

Or see this region's nucleotide sequence