Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0593 and Atu0594 are separated by 37 nucleotides Atu0594 and Atu0595 are separated by 21 nucleotides
Atu0593: Atu0593 - ABC transporter, membrane spanning protein, at 577,036 to 578,196
Atu0593
Atu0594: Atu0594 - alpha-glucosidase, at 578,234 to 579,889
Atu0594
Atu0595: Atu0595 - ABC transporter, nucleotide binding/ATPase protein, at 579,911 to 580,999
Atu0595
Position (kb) 578
579
580 Strain fitness (log2 ratio) -1
0
1
2 at 577.415 kb on + strand, within Atu0593 at 577.426 kb on - strand, within Atu0593 at 577.428 kb on + strand, within Atu0593 at 577.442 kb on + strand, within Atu0593 at 577.443 kb on + strand, within Atu0593 at 577.443 kb on - strand, within Atu0593 at 577.522 kb on + strand, within Atu0593 at 577.530 kb on - strand, within Atu0593 at 577.586 kb on + strand, within Atu0593 at 577.627 kb on - strand, within Atu0593 at 577.769 kb on - strand, within Atu0593 at 577.817 kb on + strand, within Atu0593 at 578.027 kb on + strand, within Atu0593 at 578.151 kb on - strand at 578.156 kb on - strand at 578.219 kb on + strand at 578.326 kb on - strand at 578.328 kb on + strand at 578.370 kb on + strand at 578.546 kb on - strand, within Atu0594 at 578.637 kb on + strand, within Atu0594 at 578.646 kb on + strand, within Atu0594 at 578.752 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.803 kb on - strand, within Atu0594 at 578.943 kb on + strand, within Atu0594 at 579.104 kb on + strand, within Atu0594 at 579.107 kb on + strand, within Atu0594 at 579.180 kb on - strand, within Atu0594 at 579.221 kb on + strand, within Atu0594 at 579.314 kb on - strand, within Atu0594 at 579.345 kb on - strand, within Atu0594 at 579.363 kb on + strand, within Atu0594 at 579.427 kb on + strand, within Atu0594 at 579.427 kb on + strand, within Atu0594 at 579.530 kb on + strand, within Atu0594 at 579.547 kb on + strand, within Atu0594 at 579.555 kb on - strand, within Atu0594 at 579.754 kb on + strand at 579.809 kb on + strand at 579.851 kb on - strand at 579.887 kb on + strand at 579.907 kb on + strand at 579.944 kb on + strand at 579.961 kb on + strand at 579.972 kb on + strand at 580.185 kb on - strand, within Atu0595 at 580.287 kb on + strand, within Atu0595 at 580.300 kb on + strand, within Atu0595 at 580.300 kb on + strand, within Atu0595 at 580.345 kb on - strand, within Atu0595 at 580.735 kb on + strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.871 kb on + strand, within Atu0595 at 580.885 kb on - strand, within Atu0595
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 577,415 + Atu0593 0.33 +0.8 577,426 - Atu0593 0.34 -1.2 577,428 + Atu0593 0.34 +1.3 577,442 + Atu0593 0.35 +1.2 577,443 + Atu0593 0.35 +0.5 577,443 - Atu0593 0.35 +0.8 577,522 + Atu0593 0.42 +0.6 577,530 - Atu0593 0.43 +0.9 577,586 + Atu0593 0.47 +2.6 577,627 - Atu0593 0.51 +0.5 577,769 - Atu0593 0.63 +1.4 577,817 + Atu0593 0.67 +1.0 578,027 + Atu0593 0.85 +0.6 578,151 - +0.6 578,156 - +1.3 578,219 + +1.2 578,326 - +1.2 578,328 + +1.5 578,370 + +0.8 578,546 - Atu0594 0.19 +1.2 578,637 + Atu0594 0.24 +0.6 578,646 + Atu0594 0.25 +2.2 578,752 + Atu0594 0.31 +1.3 578,787 + Atu0594 0.33 +1.5 578,787 + Atu0594 0.33 +0.8 578,803 - Atu0594 0.34 +0.4 578,943 + Atu0594 0.43 +1.6 579,104 + Atu0594 0.53 +1.1 579,107 + Atu0594 0.53 +1.3 579,180 - Atu0594 0.57 +1.0 579,221 + Atu0594 0.60 +1.0 579,314 - Atu0594 0.65 +1.9 579,345 - Atu0594 0.67 +0.3 579,363 + Atu0594 0.68 +1.5 579,427 + Atu0594 0.72 +0.5 579,427 + Atu0594 0.72 +1.4 579,530 + Atu0594 0.78 +0.5 579,547 + Atu0594 0.79 +1.2 579,555 - Atu0594 0.80 +1.2 579,754 + -0.0 579,809 + +0.8 579,851 - +1.6 579,887 + +0.3 579,907 + +0.6 579,944 + +1.5 579,961 + +1.3 579,972 + +0.4 580,185 - Atu0595 0.25 +0.8 580,287 + Atu0595 0.35 +1.5 580,300 + Atu0595 0.36 +1.1 580,300 + Atu0595 0.36 +1.1 580,345 - Atu0595 0.40 +0.2 580,735 + Atu0595 0.76 +0.6 580,743 - Atu0595 0.76 +0.9 580,743 - Atu0595 0.76 +1.1 580,743 - Atu0595 0.76 +0.9 580,743 - Atu0595 0.76 +1.0 580,743 - Atu0595 0.76 +0.9 580,871 + Atu0595 0.88 -0.6 580,885 - Atu0595 0.89 +0.9
Or see this region's nucleotide sequence