Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22185

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22180 and AMB_RS22185 are separated by 35 nucleotidesAMB_RS22185 and AMB_RS22190 overlap by 1 nucleotides AMB_RS22180: AMB_RS22180 - EamA/RhaT family transporter, at 4,786,589 to 4,787,443 _RS22180 AMB_RS22185: AMB_RS22185 - ABC transporter ATP-binding protein, at 4,787,479 to 4,789,080 _RS22185 AMB_RS22190: AMB_RS22190 - ABC transporter permease, at 4,789,080 to 4,790,108 _RS22190 Position (kb) 4787 4788 4789 4790Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4786.770 kb on + strand, within AMB_RS22180at 4786.905 kb on + strand, within AMB_RS22180at 4786.906 kb on - strand, within AMB_RS22180at 4786.906 kb on - strand, within AMB_RS22180at 4787.163 kb on + strand, within AMB_RS22180at 4787.163 kb on + strand, within AMB_RS22180at 4787.212 kb on - strand, within AMB_RS22180at 4787.212 kb on - strand, within AMB_RS22180at 4787.212 kb on - strand, within AMB_RS22180

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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4,786,770 + AMB_RS22180 0.21 -1.6
4,786,905 + AMB_RS22180 0.37 +0.2
4,786,906 - AMB_RS22180 0.37 -2.3
4,786,906 - AMB_RS22180 0.37 +0.2
4,787,163 + AMB_RS22180 0.67 -2.2
4,787,163 + AMB_RS22180 0.67 -1.9
4,787,212 - AMB_RS22180 0.73 +0.1
4,787,212 - AMB_RS22180 0.73 -1.8
4,787,212 - AMB_RS22180 0.73 -3.9

Or see this region's nucleotide sequence