Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22130 and AMB_RS22135 overlap by 8 nucleotides AMB_RS22135 and AMB_RS22140 overlap by 4 nucleotides AMB_RS22140 and AMB_RS22145 are separated by 113 nucleotides AMB_RS22145 and AMB_RS22150 are separated by 5 nucleotides AMB_RS22150 and AMB_RS22155 are separated by 46 nucleotides
AMB_RS22130: AMB_RS22130 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 4,778,640 to 4,779,527
_RS22130
AMB_RS22135: AMB_RS22135 - hypothetical protein, at 4,779,520 to 4,779,846
_RS22135
AMB_RS22140: AMB_RS22140 - YggT family protein, at 4,779,843 to 4,780,148
_RS22140
AMB_RS22145: AMB_RS22145 - dienelactone hydrolase family protein, at 4,780,262 to 4,781,128
_RS22145
AMB_RS22150: AMB_RS22150 - MarR family transcriptional regulator, at 4,781,134 to 4,781,583
_RS22150
AMB_RS22155: AMB_RS22155 - histidine phosphatase family protein, at 4,781,630 to 4,782,223
_RS22155
Position (kb) 4780
4781
4782 Strain fitness (log2 ratio) -2
-1
0
1 at 4779.992 kb on - strand, within AMB_RS22140 at 4780.094 kb on - strand, within AMB_RS22140 at 4780.242 kb on + strand at 4780.242 kb on + strand at 4780.243 kb on - strand at 4780.243 kb on - strand at 4780.261 kb on - strand at 4780.261 kb on - strand at 4780.458 kb on - strand, within AMB_RS22145 at 4780.458 kb on - strand, within AMB_RS22145 at 4780.534 kb on + strand, within AMB_RS22145 at 4780.571 kb on + strand, within AMB_RS22145 at 4780.595 kb on + strand, within AMB_RS22145 at 4780.596 kb on - strand, within AMB_RS22145 at 4780.787 kb on + strand, within AMB_RS22145 at 4780.788 kb on - strand, within AMB_RS22145 at 4780.829 kb on + strand, within AMB_RS22145 at 4780.829 kb on + strand, within AMB_RS22145 at 4780.843 kb on - strand, within AMB_RS22145 at 4780.920 kb on - strand, within AMB_RS22145 at 4780.954 kb on + strand, within AMB_RS22145 at 4781.012 kb on + strand, within AMB_RS22145 at 4781.267 kb on - strand, within AMB_RS22150 at 4781.400 kb on - strand, within AMB_RS22150 at 4781.583 kb on + strand at 4781.631 kb on + strand at 4781.675 kb on + strand at 4781.731 kb on - strand, within AMB_RS22155 at 4781.950 kb on + strand, within AMB_RS22155
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 4,779,992 - AMB_RS22140 0.49 -2.5 4,780,094 - AMB_RS22140 0.82 -0.3 4,780,242 + +1.2 4,780,242 + +0.1 4,780,243 - +0.3 4,780,243 - -2.2 4,780,261 - +0.2 4,780,261 - +0.2 4,780,458 - AMB_RS22145 0.23 +0.3 4,780,458 - AMB_RS22145 0.23 -2.1 4,780,534 + AMB_RS22145 0.31 -2.1 4,780,571 + AMB_RS22145 0.36 -1.3 4,780,595 + AMB_RS22145 0.38 -0.8 4,780,596 - AMB_RS22145 0.39 -1.9 4,780,787 + AMB_RS22145 0.61 -2.5 4,780,788 - AMB_RS22145 0.61 -0.6 4,780,829 + AMB_RS22145 0.65 -1.1 4,780,829 + AMB_RS22145 0.65 +0.2 4,780,843 - AMB_RS22145 0.67 +0.0 4,780,920 - AMB_RS22145 0.76 -0.2 4,780,954 + AMB_RS22145 0.80 +0.6 4,781,012 + AMB_RS22145 0.87 -2.3 4,781,267 - AMB_RS22150 0.30 -1.6 4,781,400 - AMB_RS22150 0.59 -0.0 4,781,583 + -0.0 4,781,631 + +0.2 4,781,675 + -2.3 4,781,731 - AMB_RS22155 0.17 -1.3 4,781,950 + AMB_RS22155 0.54 -0.8
Or see this region's nucleotide sequence