Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21230

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21220 and AMB_RS21225 are separated by 130 nucleotidesAMB_RS21225 and AMB_RS21230 overlap by 4 nucleotidesAMB_RS21230 and AMB_RS21235 are separated by 200 nucleotidesAMB_RS21235 and AMB_RS21240 overlap by 4 nucleotides AMB_RS21220: AMB_RS21220 - hypothetical protein, at 4,608,720 to 4,609,388 _RS21220 AMB_RS21225: AMB_RS21225 - (2Fe-2S)-binding protein, at 4,609,519 to 4,609,983 _RS21225 AMB_RS21230: AMB_RS21230 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 4,609,980 to 4,612,121 _RS21230 AMB_RS21235: AMB_RS21235 - heme transporter HemC, at 4,612,322 to 4,613,056 _RS21235 AMB_RS21240: AMB_RS21240 - heme exporter protein CcmD, at 4,613,053 to 4,613,262 _RS21240 Position (kb) 4609 4610 4611 4612 4613Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.099 kb on + strand, within AMB_RS21220at 4609.100 kb on - strand, within AMB_RS21220at 4609.159 kb on + strand, within AMB_RS21220at 4609.160 kb on - strand, within AMB_RS21220at 4609.480 kb on + strandat 4609.480 kb on + strandat 4609.625 kb on - strand, within AMB_RS21225at 4609.811 kb on - strand, within AMB_RS21225at 4609.924 kb on + strand, within AMB_RS21225at 4609.924 kb on + strand, within AMB_RS21225at 4609.924 kb on + strand, within AMB_RS21225at 4609.924 kb on + strand, within AMB_RS21225at 4609.925 kb on - strand, within AMB_RS21225at 4609.925 kb on - strand, within AMB_RS21225at 4609.925 kb on - strand, within AMB_RS21225at 4609.925 kb on - strand, within AMB_RS21225at 4610.215 kb on + strand, within AMB_RS21230at 4610.215 kb on + strand, within AMB_RS21230at 4610.271 kb on + strand, within AMB_RS21230at 4610.271 kb on + strand, within AMB_RS21230at 4610.276 kb on + strand, within AMB_RS21230at 4610.276 kb on + strand, within AMB_RS21230at 4610.276 kb on + strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.277 kb on - strand, within AMB_RS21230at 4610.450 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.967 kb on + strand, within AMB_RS21230at 4610.968 kb on - strand, within AMB_RS21230at 4610.968 kb on - strand, within AMB_RS21230at 4610.968 kb on - strand, within AMB_RS21230at 4610.980 kb on - strand, within AMB_RS21230at 4611.183 kb on + strand, within AMB_RS21230at 4611.183 kb on + strand, within AMB_RS21230at 4611.183 kb on + strand, within AMB_RS21230at 4611.183 kb on + strand, within AMB_RS21230at 4611.184 kb on - strand, within AMB_RS21230at 4611.184 kb on - strand, within AMB_RS21230at 4611.184 kb on - strand, within AMB_RS21230at 4611.184 kb on - strand, within AMB_RS21230at 4611.270 kb on + strand, within AMB_RS21230at 4611.271 kb on - strand, within AMB_RS21230at 4611.274 kb on - strand, within AMB_RS21230at 4611.444 kb on + strand, within AMB_RS21230at 4611.942 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.119 kb on + strandat 4612.120 kb on - strandat 4612.120 kb on - strandat 4612.120 kb on - strandat 4612.120 kb on - strandat 4612.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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4,609,039 + AMB_RS21220 0.48 -2.6
4,609,039 + AMB_RS21220 0.48 +0.2
4,609,039 + AMB_RS21220 0.48 +0.9
4,609,039 + AMB_RS21220 0.48 -2.0
4,609,039 + AMB_RS21220 0.48 +0.0
4,609,039 + AMB_RS21220 0.48 -1.6
4,609,040 - AMB_RS21220 0.48 +0.2
4,609,040 - AMB_RS21220 0.48 +0.5
4,609,040 - AMB_RS21220 0.48 -0.1
4,609,099 + AMB_RS21220 0.57 +0.4
4,609,100 - AMB_RS21220 0.57 +0.2
4,609,159 + AMB_RS21220 0.66 +0.5
4,609,160 - AMB_RS21220 0.66 +0.3
4,609,480 + -2.3
4,609,480 + -1.6
4,609,625 - AMB_RS21225 0.23 -0.3
4,609,811 - AMB_RS21225 0.63 +0.2
4,609,924 + AMB_RS21225 0.87 -0.8
4,609,924 + AMB_RS21225 0.87 +0.1
4,609,924 + AMB_RS21225 0.87 -1.6
4,609,924 + AMB_RS21225 0.87 +0.0
4,609,925 - AMB_RS21225 0.87 -0.8
4,609,925 - AMB_RS21225 0.87 -4.8
4,609,925 - AMB_RS21225 0.87 -2.4
4,609,925 - AMB_RS21225 0.87 -0.1
4,610,215 + AMB_RS21230 0.11 -0.6
4,610,215 + AMB_RS21230 0.11 -0.1
4,610,271 + AMB_RS21230 0.14 -1.6
4,610,271 + AMB_RS21230 0.14 -0.8
4,610,276 + AMB_RS21230 0.14 -1.4
4,610,276 + AMB_RS21230 0.14 -2.3
4,610,276 + AMB_RS21230 0.14 +0.3
4,610,277 - AMB_RS21230 0.14 +0.2
4,610,277 - AMB_RS21230 0.14 -0.5
4,610,277 - AMB_RS21230 0.14 -0.8
4,610,277 - AMB_RS21230 0.14 +0.3
4,610,277 - AMB_RS21230 0.14 -0.2
4,610,277 - AMB_RS21230 0.14 +0.2
4,610,277 - AMB_RS21230 0.14 +0.6
4,610,450 + AMB_RS21230 0.22 +0.4
4,610,967 + AMB_RS21230 0.46 +0.4
4,610,967 + AMB_RS21230 0.46 -0.2
4,610,967 + AMB_RS21230 0.46 -0.6
4,610,967 + AMB_RS21230 0.46 -0.0
4,610,967 + AMB_RS21230 0.46 +0.2
4,610,967 + AMB_RS21230 0.46 -0.1
4,610,967 + AMB_RS21230 0.46 -1.4
4,610,968 - AMB_RS21230 0.46 -0.9
4,610,968 - AMB_RS21230 0.46 -2.1
4,610,968 - AMB_RS21230 0.46 +0.8
4,610,980 - AMB_RS21230 0.47 +0.3
4,611,183 + AMB_RS21230 0.56 -1.6
4,611,183 + AMB_RS21230 0.56 -1.4
4,611,183 + AMB_RS21230 0.56 -1.7
4,611,183 + AMB_RS21230 0.56 +0.0
4,611,184 - AMB_RS21230 0.56 -3.3
4,611,184 - AMB_RS21230 0.56 +0.1
4,611,184 - AMB_RS21230 0.56 -0.9
4,611,184 - AMB_RS21230 0.56 -2.6
4,611,270 + AMB_RS21230 0.60 -1.6
4,611,271 - AMB_RS21230 0.60 -1.8
4,611,274 - AMB_RS21230 0.60 +0.2
4,611,444 + AMB_RS21230 0.68 +0.2
4,611,942 + -1.9
4,612,119 + -0.2
4,612,119 + -0.8
4,612,119 + +0.6
4,612,119 + -2.7
4,612,119 + -2.3
4,612,119 + -0.3
4,612,119 + -1.6
4,612,119 + -0.1
4,612,119 + -3.1
4,612,119 + +0.3
4,612,119 + -1.8
4,612,120 - -0.3
4,612,120 - -1.4
4,612,120 - -1.1
4,612,120 - -0.1
4,612,120 - +0.2

Or see this region's nucleotide sequence