Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19115 and AMB_RS19120 are separated by 605 nucleotides AMB_RS19120 and AMB_RS19125 are separated by 26 nucleotides AMB_RS19125 and AMB_RS19130 are separated by 153 nucleotides AMB_RS19130 and AMB_RS19135 are separated by 80 nucleotides
AMB_RS19115: AMB_RS19115 - hypothetical protein, at 4,157,653 to 4,158,093
_RS19115
AMB_RS19120: AMB_RS19120 - hypothetical protein, at 4,158,699 to 4,158,908
_RS19120
AMB_RS19125: AMB_RS19125 - hypothetical protein, at 4,158,935 to 4,160,386
_RS19125
AMB_RS19130: AMB_RS19130 - tRNA-Gln, at 4,160,540 to 4,160,613
_RS19130
AMB_RS19135: AMB_RS19135 - Ppx/GppA family phosphatase, at 4,160,694 to 4,161,842
_RS19135
Position (kb) 4158
4159
4160
4161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4157.949 kb on + strand, within AMB_RS19115 at 4157.949 kb on + strand, within AMB_RS19115 at 4158.156 kb on - strand at 4158.184 kb on + strand at 4158.286 kb on - strand at 4158.308 kb on + strand at 4158.496 kb on + strand at 4158.497 kb on - strand at 4158.513 kb on + strand at 4158.688 kb on - strand at 4158.867 kb on + strand, within AMB_RS19120 at 4158.901 kb on - strand at 4158.901 kb on - strand at 4158.902 kb on + strand at 4158.903 kb on - strand at 4158.903 kb on - strand at 4158.903 kb on - strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.904 kb on + strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.905 kb on - strand at 4158.906 kb on + strand at 4158.906 kb on + strand at 4158.906 kb on + strand at 4158.906 kb on + strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.907 kb on - strand at 4158.925 kb on - strand at 4158.956 kb on - strand at 4159.016 kb on - strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.038 kb on + strand at 4159.039 kb on - strand at 4159.039 kb on - strand at 4159.039 kb on - strand at 4159.039 kb on - strand at 4159.039 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.074 kb on - strand at 4159.189 kb on - strand, within AMB_RS19125 at 4159.189 kb on - strand, within AMB_RS19125 at 4159.278 kb on + strand, within AMB_RS19125 at 4159.278 kb on + strand, within AMB_RS19125 at 4159.278 kb on + strand, within AMB_RS19125 at 4159.278 kb on + strand, within AMB_RS19125 at 4159.278 kb on + strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.279 kb on - strand, within AMB_RS19125 at 4159.296 kb on + strand, within AMB_RS19125 at 4159.297 kb on - strand, within AMB_RS19125 at 4159.297 kb on - strand, within AMB_RS19125 at 4159.326 kb on + strand, within AMB_RS19125 at 4159.326 kb on + strand, within AMB_RS19125 at 4159.327 kb on - strand, within AMB_RS19125 at 4159.380 kb on - strand, within AMB_RS19125 at 4159.447 kb on + strand, within AMB_RS19125 at 4159.463 kb on - strand, within AMB_RS19125 at 4159.647 kb on + strand, within AMB_RS19125 at 4159.700 kb on + strand, within AMB_RS19125 at 4159.700 kb on + strand, within AMB_RS19125 at 4159.700 kb on + strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.701 kb on - strand, within AMB_RS19125 at 4159.702 kb on + strand, within AMB_RS19125 at 4159.702 kb on + strand, within AMB_RS19125 at 4159.702 kb on + strand, within AMB_RS19125 at 4159.703 kb on - strand, within AMB_RS19125 at 4159.703 kb on - strand, within AMB_RS19125 at 4159.704 kb on + strand, within AMB_RS19125 at 4159.704 kb on + strand, within AMB_RS19125 at 4159.704 kb on + strand, within AMB_RS19125 at 4159.704 kb on + strand, within AMB_RS19125 at 4159.705 kb on - strand, within AMB_RS19125 at 4159.705 kb on - strand, within AMB_RS19125 at 4159.705 kb on - strand, within AMB_RS19125 at 4159.705 kb on - strand, within AMB_RS19125 at 4159.929 kb on + strand, within AMB_RS19125 at 4159.929 kb on + strand, within AMB_RS19125 at 4159.930 kb on - strand, within AMB_RS19125 at 4159.930 kb on - strand, within AMB_RS19125 at 4159.930 kb on - strand, within AMB_RS19125 at 4159.971 kb on + strand, within AMB_RS19125 at 4159.971 kb on + strand, within AMB_RS19125 at 4159.972 kb on - strand, within AMB_RS19125 at 4159.972 kb on - strand, within AMB_RS19125 at 4159.972 kb on - strand, within AMB_RS19125 at 4159.992 kb on + strand, within AMB_RS19125 at 4159.992 kb on + strand, within AMB_RS19125 at 4159.992 kb on + strand, within AMB_RS19125 at 4159.992 kb on + strand, within AMB_RS19125 at 4159.992 kb on + strand, within AMB_RS19125 at 4159.993 kb on - strand, within AMB_RS19125 at 4159.993 kb on - strand, within AMB_RS19125 at 4160.044 kb on - strand, within AMB_RS19125 at 4160.063 kb on + strand, within AMB_RS19125 at 4160.064 kb on - strand, within AMB_RS19125 at 4160.139 kb on + strand, within AMB_RS19125 at 4160.140 kb on - strand, within AMB_RS19125 at 4160.140 kb on - strand, within AMB_RS19125 at 4160.140 kb on - strand, within AMB_RS19125 at 4160.277 kb on + strand at 4160.277 kb on + strand at 4160.278 kb on - strand at 4160.278 kb on - strand at 4160.301 kb on + strand at 4160.329 kb on + strand at 4160.330 kb on - strand at 4160.330 kb on - strand at 4160.330 kb on - strand at 4160.331 kb on + strand at 4160.332 kb on - strand at 4160.332 kb on - strand at 4160.332 kb on - strand at 4160.343 kb on + strand at 4160.344 kb on - strand at 4160.344 kb on - strand at 4160.344 kb on - strand at 4160.368 kb on + strand at 4160.368 kb on + strand at 4160.369 kb on - strand at 4160.460 kb on + strand at 4160.460 kb on + strand at 4160.465 kb on + strand at 4160.466 kb on - strand at 4160.512 kb on + strand at 4160.847 kb on + strand, within AMB_RS19135 at 4160.909 kb on + strand, within AMB_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 4,157,949 + AMB_RS19115 0.67 +0.1 4,157,949 + AMB_RS19115 0.67 -0.3 4,158,156 - +0.3 4,158,184 + -0.6 4,158,286 - +0.1 4,158,308 + -1.9 4,158,496 + +0.2 4,158,497 - +0.2 4,158,513 + +1.1 4,158,688 - +0.5 4,158,867 + AMB_RS19120 0.80 +0.1 4,158,901 - +0.7 4,158,901 - +1.1 4,158,902 + -1.7 4,158,903 - -1.9 4,158,903 - -0.9 4,158,903 - +0.1 4,158,904 + +0.2 4,158,904 + +1.3 4,158,904 + +0.4 4,158,904 + -2.6 4,158,904 + -0.9 4,158,904 + +1.1 4,158,904 + -2.2 4,158,904 + +0.5 4,158,904 + +0.1 4,158,905 - +0.1 4,158,905 - +0.5 4,158,905 - -1.2 4,158,905 - +1.1 4,158,905 - -1.9 4,158,905 - +0.3 4,158,905 - -1.2 4,158,905 - -0.5 4,158,906 + +0.3 4,158,906 + -0.5 4,158,906 + -2.9 4,158,906 + -1.5 4,158,907 - -0.2 4,158,907 - -0.2 4,158,907 - +0.4 4,158,907 - +0.4 4,158,907 - -0.9 4,158,907 - -0.5 4,158,907 - +1.1 4,158,925 - -1.5 4,158,956 - -3.1 4,159,016 - +0.1 4,159,038 + -1.5 4,159,038 + -2.7 4,159,038 + -0.0 4,159,038 + -1.9 4,159,038 + +0.1 4,159,038 + +0.3 4,159,038 + -0.9 4,159,039 - +0.3 4,159,039 - -2.1 4,159,039 - -1.2 4,159,039 - -1.2 4,159,039 - +0.2 4,159,074 - -1.9 4,159,074 - +0.1 4,159,074 - +0.3 4,159,074 - +0.5 4,159,074 - +2.7 4,159,074 - -1.5 4,159,074 - +0.1 4,159,189 - AMB_RS19125 0.17 +0.4 4,159,189 - AMB_RS19125 0.17 -0.5 4,159,278 + AMB_RS19125 0.24 -0.5 4,159,278 + AMB_RS19125 0.24 -0.1 4,159,278 + AMB_RS19125 0.24 +0.1 4,159,278 + AMB_RS19125 0.24 +0.2 4,159,278 + AMB_RS19125 0.24 -3.3 4,159,279 - AMB_RS19125 0.24 +0.6 4,159,279 - AMB_RS19125 0.24 +0.4 4,159,279 - AMB_RS19125 0.24 -1.7 4,159,279 - AMB_RS19125 0.24 -1.5 4,159,279 - AMB_RS19125 0.24 -1.2 4,159,279 - AMB_RS19125 0.24 -1.5 4,159,279 - AMB_RS19125 0.24 -1.1 4,159,279 - AMB_RS19125 0.24 -1.6 4,159,279 - AMB_RS19125 0.24 +0.3 4,159,279 - AMB_RS19125 0.24 -1.2 4,159,296 + AMB_RS19125 0.25 -3.0 4,159,297 - AMB_RS19125 0.25 -0.1 4,159,297 - AMB_RS19125 0.25 -1.9 4,159,326 + AMB_RS19125 0.27 -0.5 4,159,326 + AMB_RS19125 0.27 -2.7 4,159,327 - AMB_RS19125 0.27 +0.5 4,159,380 - AMB_RS19125 0.31 +0.3 4,159,447 + AMB_RS19125 0.35 -1.5 4,159,463 - AMB_RS19125 0.36 +0.6 4,159,647 + AMB_RS19125 0.49 -1.5 4,159,700 + AMB_RS19125 0.53 +0.1 4,159,700 + AMB_RS19125 0.53 +0.5 4,159,700 + AMB_RS19125 0.53 -0.4 4,159,701 - AMB_RS19125 0.53 +0.2 4,159,701 - AMB_RS19125 0.53 +0.8 4,159,701 - AMB_RS19125 0.53 -0.6 4,159,701 - AMB_RS19125 0.53 -0.0 4,159,701 - AMB_RS19125 0.53 -0.5 4,159,701 - AMB_RS19125 0.53 +1.1 4,159,701 - AMB_RS19125 0.53 -2.6 4,159,701 - AMB_RS19125 0.53 -1.2 4,159,701 - AMB_RS19125 0.53 -1.5 4,159,701 - AMB_RS19125 0.53 -0.0 4,159,701 - AMB_RS19125 0.53 +0.2 4,159,701 - AMB_RS19125 0.53 +0.3 4,159,701 - AMB_RS19125 0.53 -1.9 4,159,702 + AMB_RS19125 0.53 -0.9 4,159,702 + AMB_RS19125 0.53 +0.2 4,159,702 + AMB_RS19125 0.53 +0.3 4,159,703 - AMB_RS19125 0.53 -3.3 4,159,703 - AMB_RS19125 0.53 +0.2 4,159,704 + AMB_RS19125 0.53 -0.1 4,159,704 + AMB_RS19125 0.53 +0.6 4,159,704 + AMB_RS19125 0.53 +0.6 4,159,704 + AMB_RS19125 0.53 +0.1 4,159,705 - AMB_RS19125 0.53 -0.3 4,159,705 - AMB_RS19125 0.53 +0.2 4,159,705 - AMB_RS19125 0.53 -2.5 4,159,705 - AMB_RS19125 0.53 -1.9 4,159,929 + AMB_RS19125 0.68 +0.6 4,159,929 + AMB_RS19125 0.68 +0.3 4,159,930 - AMB_RS19125 0.69 +0.5 4,159,930 - AMB_RS19125 0.69 +0.6 4,159,930 - AMB_RS19125 0.69 -1.7 4,159,971 + AMB_RS19125 0.71 +0.6 4,159,971 + AMB_RS19125 0.71 -2.1 4,159,972 - AMB_RS19125 0.71 -1.7 4,159,972 - AMB_RS19125 0.71 +0.1 4,159,972 - AMB_RS19125 0.71 +0.4 4,159,992 + AMB_RS19125 0.73 -1.7 4,159,992 + AMB_RS19125 0.73 -1.5 4,159,992 + AMB_RS19125 0.73 -0.9 4,159,992 + AMB_RS19125 0.73 -3.0 4,159,992 + AMB_RS19125 0.73 -1.7 4,159,993 - AMB_RS19125 0.73 -0.4 4,159,993 - AMB_RS19125 0.73 +0.2 4,160,044 - AMB_RS19125 0.76 -0.5 4,160,063 + AMB_RS19125 0.78 +0.1 4,160,064 - AMB_RS19125 0.78 -0.9 4,160,139 + AMB_RS19125 0.83 -0.1 4,160,140 - AMB_RS19125 0.83 -1.9 4,160,140 - AMB_RS19125 0.83 -0.5 4,160,140 - AMB_RS19125 0.83 +0.0 4,160,277 + -0.2 4,160,277 + -2.5 4,160,278 - -0.9 4,160,278 - -0.8 4,160,301 + +0.1 4,160,329 + -2.2 4,160,330 - -0.9 4,160,330 - -0.4 4,160,330 - -2.9 4,160,331 + -0.6 4,160,332 - +0.2 4,160,332 - -1.9 4,160,332 - +0.6 4,160,343 + +0.1 4,160,344 - -2.7 4,160,344 - +0.1 4,160,344 - +0.4 4,160,368 + +0.0 4,160,368 + -2.1 4,160,369 - -0.5 4,160,460 + -0.0 4,160,460 + +0.2 4,160,465 + -2.3 4,160,466 - -0.5 4,160,512 + -1.2 4,160,847 + AMB_RS19135 0.13 +0.8 4,160,909 + AMB_RS19135 0.19 -0.9
Or see this region's nucleotide sequence