Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17820

Experiment: 30_an_mag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_mag_1
3,871,764	+		AMB_RS17815	0.18	-0.4
3,871,765	-		AMB_RS17815	0.18	-0.2
3,871,765	-		AMB_RS17815	0.18	-2.4
3,871,788	+		AMB_RS17815	0.20	-2.3
3,871,788	+		AMB_RS17815	0.20	-0.9
3,871,788	+		AMB_RS17815	0.20	-0.0
3,871,789	-		AMB_RS17815	0.20	+0.6
3,871,789	-		AMB_RS17815	0.20	-1.7
3,871,789	-		AMB_RS17815	0.20	+0.7
3,871,789	-		AMB_RS17815	0.20	-0.1
3,871,789	-		AMB_RS17815	0.20	-0.1
3,871,791	+		AMB_RS17815	0.21	-0.7
3,871,797	+		AMB_RS17815	0.21	-0.2
3,871,915	+		AMB_RS17815	0.33	-0.7
3,872,053	+		AMB_RS17815	0.46	-1.2
3,872,103	+		AMB_RS17815	0.51	-0.4
3,872,103	+		AMB_RS17815	0.51	-0.0
3,872,104	-		AMB_RS17815	0.51	-2.7
3,872,104	-		AMB_RS17815	0.51	-0.0
3,872,175	+		AMB_RS17815	0.58	-2.3
3,872,175	+		AMB_RS17815	0.58	-1.7
3,872,175	+		AMB_RS17815	0.58	+0.3
3,872,175	+		AMB_RS17815	0.58	-0.9
3,872,176	-		AMB_RS17815	0.58	+0.3
3,872,176	-		AMB_RS17815	0.58	-1.4
3,872,176	-		AMB_RS17815	0.58	-1.2
3,872,176	-		AMB_RS17815	0.58	-2.0
3,872,275	+		AMB_RS17815	0.68	-0.8
3,872,275	+		AMB_RS17815	0.68	-2.3
3,872,275	+		AMB_RS17815	0.68	-1.2
3,872,276	-		AMB_RS17815	0.68	-1.4
3,872,276	-		AMB_RS17815	0.68	+0.8
3,872,276	-		AMB_RS17815	0.68	-1.4
3,872,276	-		AMB_RS17815	0.68	+0.1
3,872,276	-		AMB_RS17815	0.68	-1.2
3,872,276	-		AMB_RS17815	0.68	+0.1
3,872,276	-		AMB_RS17815	0.68	+0.2
3,872,276	-		AMB_RS17815	0.68	+0.2
3,872,457	+		AMB_RS17815	0.86	+0.1
3,872,457	+		AMB_RS17815	0.86	-3.3
3,872,457	+		AMB_RS17815	0.86	-1.2
3,872,458	-		AMB_RS17815	0.86	-1.2
3,872,508	+				-1.4
3,872,508	+				-1.4
3,872,508	+				-1.7
3,872,508	+				-0.4
3,872,508	+				+1.1
3,872,509	-				-0.4
3,872,509	-				-1.9
3,872,509	-				-0.4
3,872,509	-				+0.1
3,872,640	-				+0.7
3,872,720	+				-1.7
3,872,720	+				-1.7
3,872,802	+				-1.2
3,872,802	+				-2.3
3,872,802	+				+1.1
3,872,803	-				+0.0
3,872,803	-				-1.9
3,872,905	+		AMB_RS17820	0.15	-1.5
3,872,911	+		AMB_RS17820	0.15	+0.5
3,873,411	-		AMB_RS17820	0.39	-1.9
3,873,461	+		AMB_RS17820	0.41	-2.7
3,873,461	+		AMB_RS17820	0.41	-0.9
3,873,461	+		AMB_RS17820	0.41	-2.3
3,873,461	+		AMB_RS17820	0.41	-3.5
3,873,461	+		AMB_RS17820	0.41	-0.9
3,873,461	+		AMB_RS17820	0.41	-0.0
3,873,462	-		AMB_RS17820	0.41	+0.1
3,873,462	-		AMB_RS17820	0.41	+1.1
3,873,491	+		AMB_RS17820	0.43	+0.8
3,873,491	+		AMB_RS17820	0.43	-2.0
3,873,492	-		AMB_RS17820	0.43	+1.1
3,873,530	+		AMB_RS17820	0.44	-1.8
3,873,531	-		AMB_RS17820	0.45	+0.3
3,873,531	-		AMB_RS17820	0.45	+0.7
3,873,531	-		AMB_RS17820	0.45	-0.5
3,873,571	-		AMB_RS17820	0.46	+0.2
3,873,655	+		AMB_RS17820	0.50	-0.1
3,873,655	+		AMB_RS17820	0.50	-0.9
3,873,656	-		AMB_RS17820	0.50	-2.7
3,873,656	-		AMB_RS17820	0.50	-0.8
3,873,656	-		AMB_RS17820	0.50	+0.1
3,873,722	+		AMB_RS17820	0.54	-1.9
3,873,722	+		AMB_RS17820	0.54	-0.1
3,873,722	+		AMB_RS17820	0.54	-0.0
3,873,723	-		AMB_RS17820	0.54	+0.3
3,873,723	-		AMB_RS17820	0.54	-0.8
3,873,723	-		AMB_RS17820	0.54	-0.5
3,873,723	-		AMB_RS17820	0.54	-0.8
3,873,737	+		AMB_RS17820	0.54	-0.9
3,873,941	+		AMB_RS17820	0.64	+0.1
3,873,941	+		AMB_RS17820	0.64	-0.9
3,873,941	+		AMB_RS17820	0.64	+0.7
3,873,941	+		AMB_RS17820	0.64	-0.1
3,873,942	-		AMB_RS17820	0.64	-0.4
3,873,942	-		AMB_RS17820	0.64	-0.9
3,873,942	-		AMB_RS17820	0.64	+0.2
3,874,211	+		AMB_RS17820	0.77	-2.3
3,874,211	+		AMB_RS17820	0.77	-2.0
3,874,211	+		AMB_RS17820	0.77	+1.1
3,874,211	+		AMB_RS17820	0.77	+0.6
3,874,212	-		AMB_RS17820	0.77	+0.2
3,874,212	-		AMB_RS17820	0.77	-0.7
3,874,212	-		AMB_RS17820	0.77	-2.0
3,874,346	+		AMB_RS17820	0.83	-1.2
3,874,347	-		AMB_RS17820	0.83	+0.4
3,874,347	-		AMB_RS17820	0.83	-2.3
3,874,347	-		AMB_RS17820	0.83	+0.5
3,874,347	-		AMB_RS17820	0.83	-2.5
3,874,422	-		AMB_RS17820	0.87	-1.2
3,874,911	+		AMB_RS17825	0.50	-0.5
3,874,911	+		AMB_RS17825	0.50	-0.1
3,874,911	+		AMB_RS17825	0.50	+0.1
3,874,912	-		AMB_RS17825	0.50	-0.2
3,874,912	-		AMB_RS17825	0.50	-1.5
3,875,007	+		AMB_RS17825	0.73	-0.1
3,875,007	+		AMB_RS17825	0.73	+0.3
3,875,008	-		AMB_RS17825	0.73	+0.5
3,875,008	-		AMB_RS17825	0.73	-2.3
3,875,056	+		AMB_RS17825	0.85	+0.5
3,875,204	+		AMB_RS17830	0.27	-1.9
3,875,210	+		AMB_RS17830	0.28	-0.0
3,875,210	+		AMB_RS17830	0.28	-0.9
3,875,210	+		AMB_RS17830	0.28	-0.5
3,875,210	+		AMB_RS17830	0.28	+0.1
3,875,210	+		AMB_RS17830	0.28	-0.5
3,875,210	+		AMB_RS17830	0.28	-0.4
3,875,211	-		AMB_RS17830	0.29	-1.7
3,875,211	-		AMB_RS17830	0.29	+0.1
3,875,211	-		AMB_RS17830	0.29	-0.2
3,875,211	-		AMB_RS17830	0.29	+0.0
3,875,211	-		AMB_RS17830	0.29	-1.3
3,875,211	-		AMB_RS17830	0.29	-0.2
3,875,211	-		AMB_RS17830	0.29	-0.3
3,875,310	+		AMB_RS17830	0.50	-2.3
3,875,352	-		AMB_RS17830	0.59	+1.1
3,875,352	-		AMB_RS17830	0.59	-0.1
3,875,376	-		AMB_RS17830	0.64	+0.5
3,875,393	+		AMB_RS17830	0.68	-0.5
3,875,393	+		AMB_RS17830	0.68	+0.1
3,875,393	+		AMB_RS17830	0.68	-1.9
3,875,393	+		AMB_RS17830	0.68	+0.3
3,875,393	+		AMB_RS17830	0.68	+1.0
3,875,393	+		AMB_RS17830	0.68	-0.1
3,875,393	+		AMB_RS17830	0.68	+0.1
3,875,393	+		AMB_RS17830	0.68	-0.5
3,875,394	-		AMB_RS17830	0.68	+0.1
3,875,394	-		AMB_RS17830	0.68	-0.6
3,875,394	-		AMB_RS17830	0.68	-0.0
3,875,396	+		AMB_RS17830	0.69	-1.2
3,875,396	+		AMB_RS17830	0.69	-2.9
3,875,396	+		AMB_RS17830	0.69	-0.8
3,875,539	+				-2.2
3,875,540	-				-1.5
3,875,554	+				-0.7
3,875,554	+				+0.1
3,875,554	+				-1.9
3,875,554	+				-0.1
3,875,554	+				-0.2
3,875,555	-				+0.2
3,875,599	+				+0.6
3,875,599	+				-0.0
3,875,618	+				-0.1
3,875,619	-				-0.8
3,875,619	-				-0.2
3,875,623	+				-0.0
3,875,623	+				-1.5
3,875,623	+				+0.1
3,875,628	-				-0.7