Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15285

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15275 and AMB_RS15280 are separated by 175 nucleotidesAMB_RS15280 and AMB_RS15285 overlap by 11 nucleotidesAMB_RS15285 and AMB_RS15290 are separated by 77 nucleotides AMB_RS15275: AMB_RS15275 - alpha/beta hydrolase, at 3,273,978 to 3,274,673 _RS15275 AMB_RS15280: AMB_RS15280 - hypothetical protein, at 3,274,849 to 3,275,208 _RS15280 AMB_RS15285: AMB_RS15285 - anhydro-N-acetylmuramic acid kinase, at 3,275,198 to 3,276,265 _RS15285 AMB_RS15290: AMB_RS15290 - tyrosine--tRNA ligase, at 3,276,343 to 3,277,590 _RS15290 Position (kb) 3275 3276 3277Strain fitness (log2 ratio) -2 -1 0 1at 3274.671 kb on + strandat 3274.672 kb on - strandat 3274.994 kb on + strand, within AMB_RS15280at 3274.995 kb on - strand, within AMB_RS15280at 3274.995 kb on - strand, within AMB_RS15280at 3275.036 kb on + strand, within AMB_RS15280at 3275.036 kb on + strand, within AMB_RS15280at 3275.595 kb on + strand, within AMB_RS15285at 3275.595 kb on + strand, within AMB_RS15285

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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3,274,671 + +0.2
3,274,672 - -0.9
3,274,994 + AMB_RS15280 0.40 -1.9
3,274,995 - AMB_RS15280 0.41 +0.0
3,274,995 - AMB_RS15280 0.41 +0.1
3,275,036 + AMB_RS15280 0.52 +1.1
3,275,036 + AMB_RS15280 0.52 +0.7
3,275,595 + AMB_RS15285 0.37 +0.0
3,275,595 + AMB_RS15285 0.37 +1.7

Or see this region's nucleotide sequence