Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14150

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14145 and AMB_RS14150 are separated by 87 nucleotidesAMB_RS14150 and AMB_RS14155 overlap by 1 nucleotidesAMB_RS14155 and AMB_RS14160 overlap by 4 nucleotides AMB_RS14145: AMB_RS14145 - peptide chain release factor 2, at 3,004,357 to 3,005,472 _RS14145 AMB_RS14150: AMB_RS14150 - hypothetical protein, at 3,005,560 to 3,006,054 _RS14150 AMB_RS14155: AMB_RS14155 - hypothetical protein, at 3,006,054 to 3,006,362 _RS14155 AMB_RS14160: AMB_RS14160 - RNA polymerase sigma factor, at 3,006,359 to 3,007,024 _RS14160 Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3005.510 kb on - strandat 3005.510 kb on - strandat 3005.691 kb on - strand, within AMB_RS14150at 3005.691 kb on - strand, within AMB_RS14150at 3005.804 kb on + strand, within AMB_RS14150at 3005.805 kb on - strand, within AMB_RS14150at 3006.073 kb on + strandat 3006.074 kb on - strandat 3006.074 kb on - strandat 3006.077 kb on - strandat 3006.077 kb on - strandat 3006.505 kb on - strand, within AMB_RS14160at 3006.508 kb on - strand, within AMB_RS14160at 3006.508 kb on - strand, within AMB_RS14160at 3006.509 kb on + strand, within AMB_RS14160at 3006.509 kb on + strand, within AMB_RS14160at 3006.510 kb on - strand, within AMB_RS14160at 3006.510 kb on - strand, within AMB_RS14160at 3006.697 kb on - strand, within AMB_RS14160

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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3,005,510 - -0.2
3,005,510 - -1.8
3,005,691 - AMB_RS14150 0.26 -3.4
3,005,691 - AMB_RS14150 0.26 -0.0
3,005,804 + AMB_RS14150 0.49 +0.2
3,005,805 - AMB_RS14150 0.49 +1.6
3,006,073 + +0.1
3,006,074 - -0.3
3,006,074 - -2.8
3,006,077 - -1.0
3,006,077 - -0.2
3,006,505 - AMB_RS14160 0.22 -2.6
3,006,508 - AMB_RS14160 0.22 -0.2
3,006,508 - AMB_RS14160 0.22 +0.6
3,006,509 + AMB_RS14160 0.23 +0.2
3,006,509 + AMB_RS14160 0.23 +0.1
3,006,510 - AMB_RS14160 0.23 -1.3
3,006,510 - AMB_RS14160 0.23 -4.6
3,006,697 - AMB_RS14160 0.51 +0.0

Or see this region's nucleotide sequence