Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS11890 and AMB_RS11895 are separated by 135 nucleotides AMB_RS11895 and AMB_RS11900 overlap by 4 nucleotides AMB_RS11900 and AMB_RS11905 are separated by 143 nucleotides AMB_RS11905 and AMB_RS11910 are separated by 60 nucleotides
AMB_RS11890: AMB_RS11890 - 3-oxoacyl-ACP synthase III, at 2,558,405 to 2,559,379
_RS11890
AMB_RS11895: AMB_RS11895 - integration host factor subunit alpha, at 2,559,515 to 2,559,835
_RS11895
AMB_RS11900: AMB_RS11900 - MerR family transcriptional regulator, at 2,559,832 to 2,560,386
_RS11900
AMB_RS11905: AMB_RS11905 - tRNA-Pro, at 2,560,530 to 2,560,606
_RS11905
AMB_RS11910: AMB_RS11910 - tetratricopeptide repeat protein, at 2,560,667 to 2,563,063
_RS11910
Position (kb)
2559
2560
2561 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2559.377 kb on + strand at 2559.377 kb on + strand at 2559.377 kb on + strand at 2559.377 kb on + strand at 2559.377 kb on + strand at 2559.377 kb on + strand at 2559.378 kb on - strand at 2559.378 kb on - strand at 2560.653 kb on - strand at 2560.739 kb on + strand at 2560.740 kb on - strand at 2560.784 kb on + strand at 2560.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 2,559,377 + -0.6 2,559,377 + +0.0 2,559,377 + -0.4 2,559,377 + +0.1 2,559,377 + -2.0 2,559,377 + -1.6 2,559,378 - -1.0 2,559,378 - -0.3 2,560,653 - -1.8 2,560,739 + -2.6 2,560,740 - -3.5 2,560,784 + +0.4 2,560,888 + -1.0
Or see this region's nucleotide sequence