Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10630

Experiment: 30_an_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS10620 and AMB_RS10625 are separated by 16 nucleotidesAMB_RS10625 and AMB_RS10630 are separated by 142 nucleotidesAMB_RS10630 and AMB_RS10635 are separated by 81 nucleotides AMB_RS10620: AMB_RS10620 - [acyl-carrier-protein] S-malonyltransferase, at 2,279,286 to 2,280,227 _RS10620 AMB_RS10625: AMB_RS10625 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 2,280,244 to 2,280,981 _RS10625 AMB_RS10630: AMB_RS10630 - acyl carrier protein, at 2,281,124 to 2,281,357 _RS10630 AMB_RS10635: AMB_RS10635 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 2,281,439 to 2,282,692 _RS10635 Position (kb) 2281 2282Strain fitness (log2 ratio) -2 -1 0 1at 2280.225 kb on + strandat 2280.225 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
remove
2,280,225 + +0.5
2,280,225 + -2.5

Or see this region's nucleotide sequence