Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07855 and AMB_RS07860 are separated by 177 nucleotides AMB_RS07860 and AMB_RS07865 are separated by 450 nucleotides
AMB_RS07855: AMB_RS07855 - chemotaxis protein, at 1,685,972 to 1,687,702
_RS07855
AMB_RS07860: AMB_RS07860 - Crp/Fnr family transcriptional regulator, at 1,687,880 to 1,688,587
_RS07860
AMB_RS07865: AMB_RS07865 - ATP-dependent chaperone ClpB, at 1,689,038 to 1,691,629
_RS07865
Position (kb) 1687
1688
1689 Strain fitness (log2 ratio) -2
-1
0
1 at 1687.064 kb on + strand, within AMB_RS07855 at 1687.064 kb on + strand, within AMB_RS07855 at 1687.064 kb on + strand, within AMB_RS07855 at 1687.065 kb on - strand, within AMB_RS07855 at 1687.065 kb on - strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.333 kb on + strand, within AMB_RS07855 at 1687.334 kb on - strand, within AMB_RS07855 at 1687.334 kb on - strand, within AMB_RS07855 at 1687.334 kb on - strand, within AMB_RS07855 at 1687.521 kb on + strand, within AMB_RS07855 at 1687.521 kb on + strand, within AMB_RS07855 at 1687.521 kb on + strand, within AMB_RS07855 at 1687.522 kb on - strand, within AMB_RS07855 at 1687.522 kb on - strand, within AMB_RS07855 at 1687.522 kb on - strand, within AMB_RS07855 at 1688.018 kb on + strand, within AMB_RS07860 at 1688.018 kb on + strand, within AMB_RS07860 at 1688.417 kb on - strand, within AMB_RS07860 at 1688.417 kb on - strand, within AMB_RS07860 at 1688.418 kb on + strand, within AMB_RS07860 at 1688.418 kb on + strand, within AMB_RS07860 at 1688.418 kb on + strand, within AMB_RS07860 at 1688.418 kb on + strand, within AMB_RS07860 at 1688.419 kb on - strand, within AMB_RS07860 at 1688.419 kb on - strand, within AMB_RS07860 at 1688.448 kb on + strand, within AMB_RS07860 at 1688.448 kb on + strand, within AMB_RS07860 at 1688.448 kb on + strand, within AMB_RS07860 at 1688.844 kb on + strand at 1688.955 kb on + strand at 1688.956 kb on - strand at 1688.956 kb on - strand at 1689.055 kb on + strand at 1689.515 kb on + strand, within AMB_RS07865 at 1689.515 kb on + strand, within AMB_RS07865 at 1689.515 kb on + strand, within AMB_RS07865 at 1689.515 kb on + strand, within AMB_RS07865 at 1689.516 kb on - strand, within AMB_RS07865 at 1689.516 kb on - strand, within AMB_RS07865 at 1689.516 kb on - strand, within AMB_RS07865 at 1689.516 kb on - strand, within AMB_RS07865 at 1689.534 kb on - strand, within AMB_RS07865
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 1,687,064 + AMB_RS07855 0.63 -0.6 1,687,064 + AMB_RS07855 0.63 -2.1 1,687,064 + AMB_RS07855 0.63 -1.6 1,687,065 - AMB_RS07855 0.63 -0.1 1,687,065 - AMB_RS07855 0.63 -2.3 1,687,333 + AMB_RS07855 0.79 -1.0 1,687,333 + AMB_RS07855 0.79 -2.1 1,687,333 + AMB_RS07855 0.79 -1.3 1,687,333 + AMB_RS07855 0.79 -2.1 1,687,333 + AMB_RS07855 0.79 -2.3 1,687,333 + AMB_RS07855 0.79 -2.1 1,687,334 - AMB_RS07855 0.79 -1.6 1,687,334 - AMB_RS07855 0.79 -1.6 1,687,334 - AMB_RS07855 0.79 -0.6 1,687,521 + AMB_RS07855 0.89 -1.6 1,687,521 + AMB_RS07855 0.89 -0.3 1,687,521 + AMB_RS07855 0.89 -0.2 1,687,522 - AMB_RS07855 0.90 -0.8 1,687,522 - AMB_RS07855 0.90 +0.3 1,687,522 - AMB_RS07855 0.90 -0.6 1,688,018 + AMB_RS07860 0.19 -1.8 1,688,018 + AMB_RS07860 0.19 +0.3 1,688,417 - AMB_RS07860 0.76 -0.7 1,688,417 - AMB_RS07860 0.76 -0.7 1,688,418 + AMB_RS07860 0.76 -0.6 1,688,418 + AMB_RS07860 0.76 +0.3 1,688,418 + AMB_RS07860 0.76 +0.0 1,688,418 + AMB_RS07860 0.76 -1.8 1,688,419 - AMB_RS07860 0.76 +0.1 1,688,419 - AMB_RS07860 0.76 -1.8 1,688,448 + AMB_RS07860 0.80 -0.3 1,688,448 + AMB_RS07860 0.80 +0.4 1,688,448 + AMB_RS07860 0.80 -0.1 1,688,844 + -0.6 1,688,955 + +0.3 1,688,956 - -0.5 1,688,956 - -2.0 1,689,055 + -0.6 1,689,515 + AMB_RS07865 0.18 -1.1 1,689,515 + AMB_RS07865 0.18 -0.5 1,689,515 + AMB_RS07865 0.18 -1.0 1,689,515 + AMB_RS07865 0.18 -1.9 1,689,516 - AMB_RS07865 0.18 +0.0 1,689,516 - AMB_RS07865 0.18 -0.9 1,689,516 - AMB_RS07865 0.18 -1.3 1,689,516 - AMB_RS07865 0.18 -1.1 1,689,534 - AMB_RS07865 0.19 -0.5
Or see this region's nucleotide sequence