Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06585

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06575 and AMB_RS06580 are separated by 5 nucleotidesAMB_RS06580 and AMB_RS06585 overlap by 16 nucleotidesAMB_RS06585 and AMB_RS06590 are separated by 373 nucleotidesAMB_RS06590 and AMB_RS24235 are separated by 54 nucleotides AMB_RS06575: AMB_RS06575 - ABC transporter, at 1,411,999 to 1,412,943 _RS06575 AMB_RS06580: AMB_RS06580 - DUF1007 domain-containing protein, at 1,412,949 to 1,413,674 _RS06580 AMB_RS06585: AMB_RS06585 - cystathionine beta-lyase, at 1,413,659 to 1,414,831 _RS06585 AMB_RS06590: AMB_RS06590 - hypothetical protein, at 1,415,205 to 1,415,612 _RS06590 AMB_RS24235: AMB_RS24235 - IS5/IS1182 family transposase, at 1,415,667 to 1,416,508 _RS24235 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1at 1412.950 kb on + strandat 1412.950 kb on + strandat 1413.002 kb on + strandat 1413.002 kb on + strandat 1413.003 kb on - strandat 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.098 kb on - strand, within AMB_RS06580at 1413.098 kb on - strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.179 kb on - strand, within AMB_RS06580at 1413.259 kb on + strand, within AMB_RS06580at 1413.259 kb on + strand, within AMB_RS06580at 1413.260 kb on - strand, within AMB_RS06580at 1413.862 kb on - strand, within AMB_RS06585at 1413.988 kb on - strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.219 kb on + strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.449 kb on + strand, within AMB_RS06585at 1414.449 kb on + strand, within AMB_RS06585at 1414.450 kb on - strand, within AMB_RS06585at 1414.450 kb on - strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.453 kb on - strand, within AMB_RS06585at 1414.453 kb on - strand, within AMB_RS06585at 1414.512 kb on + strand, within AMB_RS06585at 1414.513 kb on - strand, within AMB_RS06585at 1414.607 kb on - strand, within AMB_RS06585at 1414.677 kb on + strand, within AMB_RS06585at 1414.677 kb on + strand, within AMB_RS06585at 1414.678 kb on - strand, within AMB_RS06585at 1414.678 kb on - strand, within AMB_RS06585at 1414.678 kb on - strand, within AMB_RS06585at 1414.756 kb on - strandat 1414.756 kb on - strandat 1414.756 kb on - strandat 1415.050 kb on - strandat 1415.050 kb on - strandat 1415.053 kb on + strandat 1415.053 kb on + strandat 1415.053 kb on + strandat 1415.054 kb on - strandat 1415.054 kb on - strandat 1415.054 kb on - strandat 1415.054 kb on - strandat 1415.054 kb on - strandat 1415.081 kb on - strandat 1415.162 kb on + strandat 1415.169 kb on + strandat 1415.171 kb on + strandat 1415.205 kb on - strandat 1415.351 kb on + strand, within AMB_RS06590at 1415.351 kb on + strand, within AMB_RS06590at 1415.415 kb on + strand, within AMB_RS06590at 1415.415 kb on + strand, within AMB_RS06590at 1415.416 kb on - strand, within AMB_RS06590at 1415.416 kb on - strand, within AMB_RS06590at 1415.483 kb on + strand, within AMB_RS06590at 1415.484 kb on - strand, within AMB_RS06590at 1415.484 kb on - strand, within AMB_RS06590at 1415.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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1,412,950 + -1.9
1,412,950 + -1.7
1,413,002 + +0.1
1,413,002 + +0.5
1,413,003 - -0.2
1,413,097 + AMB_RS06580 0.20 +0.0
1,413,097 + AMB_RS06580 0.20 -0.9
1,413,097 + AMB_RS06580 0.20 +0.9
1,413,097 + AMB_RS06580 0.20 +0.7
1,413,098 - AMB_RS06580 0.21 -0.6
1,413,098 - AMB_RS06580 0.21 +1.1
1,413,112 + AMB_RS06580 0.22 -1.7
1,413,112 + AMB_RS06580 0.22 +0.5
1,413,112 + AMB_RS06580 0.22 +0.1
1,413,112 + AMB_RS06580 0.22 +1.1
1,413,112 + AMB_RS06580 0.22 -2.7
1,413,113 - AMB_RS06580 0.23 -1.5
1,413,113 - AMB_RS06580 0.23 +0.8
1,413,113 - AMB_RS06580 0.23 -2.4
1,413,179 - AMB_RS06580 0.32 +0.3
1,413,259 + AMB_RS06580 0.43 -2.2
1,413,259 + AMB_RS06580 0.43 +0.2
1,413,260 - AMB_RS06580 0.43 -1.5
1,413,862 - AMB_RS06585 0.17 +0.0
1,413,988 - AMB_RS06585 0.28 +0.3
1,414,101 + AMB_RS06585 0.38 -1.2
1,414,101 + AMB_RS06585 0.38 -1.2
1,414,101 + AMB_RS06585 0.38 +0.0
1,414,101 + AMB_RS06585 0.38 -0.8
1,414,101 + AMB_RS06585 0.38 +0.3
1,414,101 + AMB_RS06585 0.38 -1.1
1,414,101 + AMB_RS06585 0.38 -1.9
1,414,101 + AMB_RS06585 0.38 +0.6
1,414,101 + AMB_RS06585 0.38 +0.6
1,414,102 - AMB_RS06585 0.38 -0.0
1,414,102 - AMB_RS06585 0.38 -0.8
1,414,102 - AMB_RS06585 0.38 +0.1
1,414,219 + AMB_RS06585 0.48 +0.9
1,414,220 - AMB_RS06585 0.48 +0.9
1,414,220 - AMB_RS06585 0.48 +0.2
1,414,220 - AMB_RS06585 0.48 -1.9
1,414,221 + AMB_RS06585 0.48 +0.1
1,414,221 + AMB_RS06585 0.48 -1.5
1,414,221 + AMB_RS06585 0.48 -0.5
1,414,221 + AMB_RS06585 0.48 -2.2
1,414,221 + AMB_RS06585 0.48 +0.2
1,414,221 + AMB_RS06585 0.48 +0.1
1,414,221 + AMB_RS06585 0.48 -0.3
1,414,222 - AMB_RS06585 0.48 +0.3
1,414,222 - AMB_RS06585 0.48 +0.1
1,414,222 - AMB_RS06585 0.48 +0.2
1,414,222 - AMB_RS06585 0.48 -2.9
1,414,247 - AMB_RS06585 0.50 +0.1
1,414,247 - AMB_RS06585 0.50 +0.0
1,414,247 - AMB_RS06585 0.50 +0.5
1,414,449 + AMB_RS06585 0.67 -0.7
1,414,449 + AMB_RS06585 0.67 -2.2
1,414,450 - AMB_RS06585 0.67 -0.5
1,414,450 - AMB_RS06585 0.67 -0.0
1,414,452 + AMB_RS06585 0.68 -0.0
1,414,452 + AMB_RS06585 0.68 +0.1
1,414,452 + AMB_RS06585 0.68 +0.0
1,414,452 + AMB_RS06585 0.68 -0.2
1,414,453 - AMB_RS06585 0.68 -0.1
1,414,453 - AMB_RS06585 0.68 -1.7
1,414,512 + AMB_RS06585 0.73 -2.2
1,414,513 - AMB_RS06585 0.73 -1.2
1,414,607 - AMB_RS06585 0.81 +0.1
1,414,677 + AMB_RS06585 0.87 +0.8
1,414,677 + AMB_RS06585 0.87 -0.1
1,414,678 - AMB_RS06585 0.87 -0.7
1,414,678 - AMB_RS06585 0.87 +0.4
1,414,678 - AMB_RS06585 0.87 +0.1
1,414,756 - -0.2
1,414,756 - -0.9
1,414,756 - -2.7
1,415,050 - +0.3
1,415,050 - -2.2
1,415,053 + -1.2
1,415,053 + -1.0
1,415,053 + -1.5
1,415,054 - -0.4
1,415,054 - +0.2
1,415,054 - -2.8
1,415,054 - -1.9
1,415,054 - -1.2
1,415,081 - -0.5
1,415,162 + +0.9
1,415,169 + -0.9
1,415,171 + -2.4
1,415,205 - +0.0
1,415,351 + AMB_RS06590 0.36 -1.7
1,415,351 + AMB_RS06590 0.36 -0.6
1,415,415 + AMB_RS06590 0.51 -0.5
1,415,415 + AMB_RS06590 0.51 +0.0
1,415,416 - AMB_RS06590 0.52 +0.2
1,415,416 - AMB_RS06590 0.52 +0.3
1,415,483 + AMB_RS06590 0.68 -1.5
1,415,484 - AMB_RS06590 0.68 -1.0
1,415,484 - AMB_RS06590 0.68 +0.1
1,415,588 - +0.1

Or see this region's nucleotide sequence