Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04775

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04765 and AMB_RS04770 overlap by 55 nucleotidesAMB_RS04770 and AMB_RS04775 are separated by 121 nucleotidesAMB_RS04775 and AMB_RS04780 are separated by 38 nucleotides AMB_RS04765: AMB_RS04765 - transcriptional regulator, at 993,313 to 993,726 _RS04765 AMB_RS04770: AMB_RS04770 - IS3 family transposase, at 993,672 to 994,339 _RS04770 AMB_RS04775: AMB_RS04775 - integrase, at 994,461 to 995,318 _RS04775 AMB_RS04780: AMB_RS04780 - IS91 family transposase, at 995,357 to 996,529 _RS04780 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1at 993.622 kb on + strand, within AMB_RS04765at 993.687 kb on + strandat 993.706 kb on - strandat 993.847 kb on + strand, within AMB_RS04770at 993.848 kb on - strand, within AMB_RS04770at 993.952 kb on + strand, within AMB_RS04770at 993.952 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 994.114 kb on - strand, within AMB_RS04770at 994.226 kb on + strand, within AMB_RS04770at 994.337 kb on + strandat 994.338 kb on - strandat 994.338 kb on - strandat 994.490 kb on + strandat 994.491 kb on - strandat 994.491 kb on - strandat 994.491 kb on - strandat 994.542 kb on + strandat 994.542 kb on + strandat 994.543 kb on - strandat 994.543 kb on - strandat 994.543 kb on - strandat 994.647 kb on - strand, within AMB_RS04775at 994.647 kb on - strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.696 kb on - strand, within AMB_RS04775at 994.740 kb on + strand, within AMB_RS04775at 994.740 kb on + strand, within AMB_RS04775at 994.768 kb on + strand, within AMB_RS04775at 994.769 kb on - strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.849 kb on - strand, within AMB_RS04775at 994.849 kb on - strand, within AMB_RS04775at 994.957 kb on - strand, within AMB_RS04775at 994.957 kb on - strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 995.072 kb on + strand, within AMB_RS04775at 995.073 kb on - strand, within AMB_RS04775at 995.144 kb on + strand, within AMB_RS04775at 995.145 kb on - strand, within AMB_RS04775at 995.219 kb on - strand, within AMB_RS04775at 995.219 kb on - strand, within AMB_RS04775at 995.235 kb on + strandat 995.236 kb on - strandat 995.245 kb on + strandat 995.374 kb on + strandat 995.513 kb on + strand, within AMB_RS04780at 995.513 kb on + strand, within AMB_RS04780at 995.514 kb on - strand, within AMB_RS04780at 995.609 kb on + strand, within AMB_RS04780at 995.609 kb on + strand, within AMB_RS04780at 995.610 kb on - strand, within AMB_RS04780at 995.610 kb on - strand, within AMB_RS04780at 995.610 kb on - strand, within AMB_RS04780at 995.610 kb on - strand, within AMB_RS04780at 995.678 kb on + strand, within AMB_RS04780at 995.679 kb on - strand, within AMB_RS04780at 995.679 kb on - strand, within AMB_RS04780at 995.776 kb on + strand, within AMB_RS04780at 995.777 kb on - strand, within AMB_RS04780at 995.777 kb on - strand, within AMB_RS04780at 995.777 kb on - strand, within AMB_RS04780at 995.777 kb on - strand, within AMB_RS04780at 995.777 kb on - strand, within AMB_RS04780at 995.839 kb on - strand, within AMB_RS04780at 995.922 kb on + strand, within AMB_RS04780at 995.923 kb on - strand, within AMB_RS04780at 995.923 kb on - strand, within AMB_RS04780at 996.018 kb on - strand, within AMB_RS04780at 996.048 kb on + strand, within AMB_RS04780at 996.053 kb on + strand, within AMB_RS04780at 996.053 kb on + strand, within AMB_RS04780at 996.054 kb on - strand, within AMB_RS04780at 996.095 kb on + strand, within AMB_RS04780at 996.095 kb on + strand, within AMB_RS04780at 996.095 kb on + strand, within AMB_RS04780at 996.096 kb on - strand, within AMB_RS04780at 996.096 kb on - strand, within AMB_RS04780at 996.107 kb on + strand, within AMB_RS04780at 996.107 kb on + strand, within AMB_RS04780at 996.107 kb on + strand, within AMB_RS04780at 996.107 kb on + strand, within AMB_RS04780at 996.108 kb on - strand, within AMB_RS04780at 996.109 kb on + strand, within AMB_RS04780at 996.109 kb on + strand, within AMB_RS04780at 996.109 kb on + strand, within AMB_RS04780at 996.110 kb on - strand, within AMB_RS04780at 996.110 kb on - strand, within AMB_RS04780at 996.185 kb on + strand, within AMB_RS04780at 996.185 kb on + strand, within AMB_RS04780at 996.291 kb on - strand, within AMB_RS04780

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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993,622 + AMB_RS04765 0.75 -0.0
993,687 + -1.9
993,706 - -0.7
993,847 + AMB_RS04770 0.26 -1.7
993,848 - AMB_RS04770 0.26 +0.2
993,952 + AMB_RS04770 0.42 -0.4
993,952 + AMB_RS04770 0.42 -0.0
993,996 + AMB_RS04770 0.49 +0.4
993,996 + AMB_RS04770 0.49 -0.2
993,996 + AMB_RS04770 0.49 -0.5
993,996 + AMB_RS04770 0.49 -1.4
993,996 + AMB_RS04770 0.49 -2.9
993,996 + AMB_RS04770 0.49 -0.1
993,997 - AMB_RS04770 0.49 +0.8
993,997 - AMB_RS04770 0.49 -0.1
993,997 - AMB_RS04770 0.49 +0.2
993,997 - AMB_RS04770 0.49 +0.4
993,997 - AMB_RS04770 0.49 -0.8
993,997 - AMB_RS04770 0.49 +0.6
993,997 - AMB_RS04770 0.49 -1.2
993,997 - AMB_RS04770 0.49 -0.0
994,114 - AMB_RS04770 0.66 +0.1
994,226 + AMB_RS04770 0.83 +1.1
994,337 + -2.7
994,338 - -1.4
994,338 - -0.2
994,490 + +0.0
994,491 - +0.4
994,491 - -2.3
994,491 - -1.4
994,542 + -0.5
994,542 + +0.2
994,543 - +1.0
994,543 - +0.6
994,543 - -0.2
994,647 - AMB_RS04775 0.22 +0.8
994,647 - AMB_RS04775 0.22 -0.3
994,695 + AMB_RS04775 0.27 +0.0
994,695 + AMB_RS04775 0.27 -2.3
994,695 + AMB_RS04775 0.27 +0.3
994,696 - AMB_RS04775 0.27 -2.4
994,740 + AMB_RS04775 0.33 -0.0
994,740 + AMB_RS04775 0.33 +0.0
994,768 + AMB_RS04775 0.36 -0.6
994,769 - AMB_RS04775 0.36 +0.2
994,848 + AMB_RS04775 0.45 -2.2
994,848 + AMB_RS04775 0.45 -0.9
994,848 + AMB_RS04775 0.45 +0.4
994,848 + AMB_RS04775 0.45 -1.7
994,848 + AMB_RS04775 0.45 +0.9
994,848 + AMB_RS04775 0.45 -2.2
994,849 - AMB_RS04775 0.45 -0.2
994,849 - AMB_RS04775 0.45 -1.2
994,957 - AMB_RS04775 0.58 -0.9
994,957 - AMB_RS04775 0.58 -2.8
994,998 + AMB_RS04775 0.63 -0.2
994,998 + AMB_RS04775 0.63 +0.4
994,998 + AMB_RS04775 0.63 -1.9
994,999 - AMB_RS04775 0.63 -2.2
994,999 - AMB_RS04775 0.63 +1.1
994,999 - AMB_RS04775 0.63 +0.1
995,072 + AMB_RS04775 0.71 +0.1
995,073 - AMB_RS04775 0.71 +0.5
995,144 + AMB_RS04775 0.80 +0.4
995,145 - AMB_RS04775 0.80 -0.4
995,219 - AMB_RS04775 0.88 +0.2
995,219 - AMB_RS04775 0.88 -1.0
995,235 + +0.9
995,236 - -0.9
995,245 + -0.4
995,374 + +0.0
995,513 + AMB_RS04780 0.13 -0.1
995,513 + AMB_RS04780 0.13 +0.7
995,514 - AMB_RS04780 0.13 -0.9
995,609 + AMB_RS04780 0.21 -0.4
995,609 + AMB_RS04780 0.21 +0.4
995,610 - AMB_RS04780 0.22 +0.3
995,610 - AMB_RS04780 0.22 -1.7
995,610 - AMB_RS04780 0.22 -1.0
995,610 - AMB_RS04780 0.22 +0.1
995,678 + AMB_RS04780 0.27 +0.3
995,679 - AMB_RS04780 0.27 -0.9
995,679 - AMB_RS04780 0.27 -0.1
995,776 + AMB_RS04780 0.36 -0.9
995,777 - AMB_RS04780 0.36 -1.7
995,777 - AMB_RS04780 0.36 -0.1
995,777 - AMB_RS04780 0.36 +0.5
995,777 - AMB_RS04780 0.36 +0.7
995,777 - AMB_RS04780 0.36 -1.7
995,839 - AMB_RS04780 0.41 +1.1
995,922 + AMB_RS04780 0.48 +0.9
995,923 - AMB_RS04780 0.48 -2.3
995,923 - AMB_RS04780 0.48 -2.2
996,018 - AMB_RS04780 0.56 -0.4
996,048 + AMB_RS04780 0.59 -1.2
996,053 + AMB_RS04780 0.59 -0.4
996,053 + AMB_RS04780 0.59 -1.2
996,054 - AMB_RS04780 0.59 -0.4
996,095 + AMB_RS04780 0.63 +0.2
996,095 + AMB_RS04780 0.63 +0.7
996,095 + AMB_RS04780 0.63 -1.6
996,096 - AMB_RS04780 0.63 -1.4
996,096 - AMB_RS04780 0.63 -1.2
996,107 + AMB_RS04780 0.64 -1.4
996,107 + AMB_RS04780 0.64 +0.0
996,107 + AMB_RS04780 0.64 -0.4
996,107 + AMB_RS04780 0.64 +0.4
996,108 - AMB_RS04780 0.64 -0.7
996,109 + AMB_RS04780 0.64 -1.2
996,109 + AMB_RS04780 0.64 -0.4
996,109 + AMB_RS04780 0.64 +0.3
996,110 - AMB_RS04780 0.64 -1.9
996,110 - AMB_RS04780 0.64 -0.4
996,185 + AMB_RS04780 0.71 -0.1
996,185 + AMB_RS04780 0.71 +0.2
996,291 - AMB_RS04780 0.80 +0.4

Or see this region's nucleotide sequence