Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04275

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04270 and AMB_RS04275 are separated by 1 nucleotidesAMB_RS04275 and AMB_RS04280 are separated by 37 nucleotidesAMB_RS04280 and AMB_RS04285 are separated by 130 nucleotides AMB_RS04270: AMB_RS04270 - insulinase family protein, at 896,604 to 898,001 _RS04270 AMB_RS04275: AMB_RS04275 - insulinase family protein, at 898,003 to 899,415 _RS04275 AMB_RS04280: AMB_RS04280 - polyhydroxyalkanoate synthesis repressor PhaR, at 899,453 to 900,016 _RS04280 AMB_RS04285: AMB_RS04285 - hypothetical protein, at 900,147 to 900,596 _RS04285 Position (kb) 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.123 kb on + strand, within AMB_RS04270at 897.123 kb on + strand, within AMB_RS04270at 897.124 kb on - strand, within AMB_RS04270at 897.295 kb on - strand, within AMB_RS04270at 897.295 kb on - strand, within AMB_RS04270at 897.298 kb on - strand, within AMB_RS04270at 897.420 kb on + strand, within AMB_RS04270at 897.463 kb on - strand, within AMB_RS04270at 897.516 kb on + strand, within AMB_RS04270at 897.517 kb on - strand, within AMB_RS04270at 897.567 kb on + strand, within AMB_RS04270at 898.031 kb on + strandat 898.032 kb on - strandat 898.963 kb on + strand, within AMB_RS04275at 898.963 kb on + strand, within AMB_RS04275at 899.047 kb on + strand, within AMB_RS04275at 899.059 kb on + strand, within AMB_RS04275at 899.060 kb on - strand, within AMB_RS04275at 899.200 kb on + strand, within AMB_RS04275at 899.201 kb on - strand, within AMB_RS04275at 899.454 kb on + strandat 899.455 kb on - strandat 899.455 kb on - strandat 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.748 kb on + strand, within AMB_RS04280at 899.848 kb on + strand, within AMB_RS04280at 899.929 kb on - strand, within AMB_RS04280at 899.968 kb on - strandat 900.073 kb on + strandat 900.073 kb on + strandat 900.074 kb on - strandat 900.074 kb on - strandat 900.076 kb on + strandat 900.087 kb on + strandat 900.087 kb on + strandat 900.087 kb on + strandat 900.146 kb on + strandat 900.171 kb on + strandat 900.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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897,123 + AMB_RS04270 0.37 -0.2
897,123 + AMB_RS04270 0.37 -1.2
897,124 - AMB_RS04270 0.37 -1.9
897,295 - AMB_RS04270 0.49 -2.2
897,295 - AMB_RS04270 0.49 -1.4
897,298 - AMB_RS04270 0.50 -1.2
897,420 + AMB_RS04270 0.58 -2.2
897,463 - AMB_RS04270 0.61 -1.2
897,516 + AMB_RS04270 0.65 -1.7
897,517 - AMB_RS04270 0.65 -0.2
897,567 + AMB_RS04270 0.69 +0.2
898,031 + +0.3
898,032 - -1.7
898,963 + AMB_RS04275 0.68 -2.3
898,963 + AMB_RS04275 0.68 -0.6
899,047 + AMB_RS04275 0.74 -0.3
899,059 + AMB_RS04275 0.75 +0.1
899,060 - AMB_RS04275 0.75 -0.2
899,200 + AMB_RS04275 0.85 -1.9
899,201 - AMB_RS04275 0.85 -0.1
899,454 + +0.3
899,455 - +0.4
899,455 - -2.0
899,553 + AMB_RS04280 0.18 -0.4
899,553 + AMB_RS04280 0.18 +1.1
899,553 + AMB_RS04280 0.18 -1.2
899,553 + AMB_RS04280 0.18 +2.1
899,553 + AMB_RS04280 0.18 +0.3
899,553 + AMB_RS04280 0.18 -1.5
899,553 + AMB_RS04280 0.18 +0.0
899,553 + AMB_RS04280 0.18 -0.1
899,553 + AMB_RS04280 0.18 -1.9
899,553 + AMB_RS04280 0.18 -0.2
899,554 - AMB_RS04280 0.18 -0.2
899,554 - AMB_RS04280 0.18 -0.0
899,554 - AMB_RS04280 0.18 +0.1
899,554 - AMB_RS04280 0.18 -0.2
899,554 - AMB_RS04280 0.18 +0.5
899,554 - AMB_RS04280 0.18 -0.5
899,554 - AMB_RS04280 0.18 -0.1
899,554 - AMB_RS04280 0.18 +0.2
899,554 - AMB_RS04280 0.18 -0.3
899,554 - AMB_RS04280 0.18 -0.3
899,554 - AMB_RS04280 0.18 +0.1
899,554 - AMB_RS04280 0.18 -0.2
899,554 - AMB_RS04280 0.18 +0.1
899,554 - AMB_RS04280 0.18 -0.9
899,554 - AMB_RS04280 0.18 +0.5
899,554 - AMB_RS04280 0.18 +0.6
899,554 - AMB_RS04280 0.18 -0.0
899,659 + AMB_RS04280 0.37 -0.5
899,659 + AMB_RS04280 0.37 -0.8
899,659 + AMB_RS04280 0.37 -0.7
899,659 + AMB_RS04280 0.37 -0.4
899,659 + AMB_RS04280 0.37 +0.4
899,659 + AMB_RS04280 0.37 -1.1
899,659 + AMB_RS04280 0.37 -0.1
899,659 + AMB_RS04280 0.37 -0.4
899,659 + AMB_RS04280 0.37 +1.1
899,659 + AMB_RS04280 0.37 +0.5
899,659 + AMB_RS04280 0.37 -0.1
899,659 + AMB_RS04280 0.37 -0.5
899,659 + AMB_RS04280 0.37 +0.1
899,660 - AMB_RS04280 0.37 -2.3
899,660 - AMB_RS04280 0.37 +0.1
899,660 - AMB_RS04280 0.37 -0.9
899,660 - AMB_RS04280 0.37 -2.1
899,660 - AMB_RS04280 0.37 +0.1
899,660 - AMB_RS04280 0.37 -1.2
899,660 - AMB_RS04280 0.37 -1.7
899,661 + AMB_RS04280 0.37 -1.7
899,661 + AMB_RS04280 0.37 -1.2
899,661 + AMB_RS04280 0.37 -2.8
899,662 - AMB_RS04280 0.37 -0.5
899,662 - AMB_RS04280 0.37 -0.9
899,662 - AMB_RS04280 0.37 -3.4
899,662 - AMB_RS04280 0.37 -1.9
899,748 + AMB_RS04280 0.52 -2.6
899,848 + AMB_RS04280 0.70 -2.7
899,929 - AMB_RS04280 0.84 -3.1
899,968 - -2.2
900,073 + -1.7
900,073 + -1.2
900,074 - -0.5
900,074 - +0.2
900,076 + -2.3
900,087 + -1.0
900,087 + -0.2
900,087 + -0.9
900,146 + -2.3
900,171 + -0.2
900,171 + +0.2

Or see this region's nucleotide sequence