Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03360

Experiment: 30_an_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS03355 and AMB_RS03360 are separated by 24 nucleotidesAMB_RS03360 and AMB_RS03365 are separated by 356 nucleotides AMB_RS03355: AMB_RS03355 - two-component system response regulator, at 703,170 to 704,333 _RS03355 AMB_RS03360: AMB_RS03360 - hypothetical protein, at 704,358 to 704,660 _RS03360 AMB_RS03365: AMB_RS03365 - site-specific integrase, at 705,017 to 706,354 _RS03365 Position (kb) 704 705Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 703.397 kb on - strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.651 kb on - strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.694 kb on - strand, within AMB_RS03355at 703.694 kb on - strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.790 kb on - strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.899 kb on + strand, within AMB_RS03355at 703.962 kb on + strand, within AMB_RS03355at 703.962 kb on + strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.076 kb on - strand, within AMB_RS03355at 704.192 kb on - strand, within AMB_RS03355at 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.421 kb on - strand, within AMB_RS03360at 704.421 kb on - strand, within AMB_RS03360at 704.444 kb on + strand, within AMB_RS03360at 704.500 kb on + strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.507 kb on - strand, within AMB_RS03360at 704.507 kb on - strand, within AMB_RS03360at 704.600 kb on + strand, within AMB_RS03360at 704.600 kb on + strand, within AMB_RS03360at 704.601 kb on - strand, within AMB_RS03360at 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.714 kb on + strandat 704.715 kb on - strandat 704.718 kb on + strandat 704.937 kb on + strandat 704.937 kb on + strandat 704.938 kb on - strandat 705.001 kb on + strandat 705.061 kb on - strandat 705.061 kb on - strandat 705.091 kb on + strandat 705.091 kb on + strandat 705.111 kb on + strandat 705.121 kb on + strandat 705.121 kb on + strandat 705.122 kb on - strandat 705.154 kb on + strand, within AMB_RS03365at 705.155 kb on - strand, within AMB_RS03365at 705.155 kb on - strand, within AMB_RS03365at 705.312 kb on - strand, within AMB_RS03365at 705.322 kb on - strand, within AMB_RS03365at 705.356 kb on + strand, within AMB_RS03365at 705.357 kb on - strand, within AMB_RS03365at 705.357 kb on - strand, within AMB_RS03365at 705.449 kb on + strand, within AMB_RS03365at 705.452 kb on - strand, within AMB_RS03365at 705.553 kb on + strand, within AMB_RS03365at 705.553 kb on + strand, within AMB_RS03365at 705.595 kb on - strand, within AMB_RS03365at 705.595 kb on - strand, within AMB_RS03365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
remove
703,397 - AMB_RS03355 0.20 -2.6
703,475 + AMB_RS03355 0.26 -0.7
703,475 + AMB_RS03355 0.26 -3.8
703,475 + AMB_RS03355 0.26 -2.4
703,476 - AMB_RS03355 0.26 -0.6
703,476 - AMB_RS03355 0.26 -0.9
703,476 - AMB_RS03355 0.26 -2.0
703,476 - AMB_RS03355 0.26 -1.8
703,476 - AMB_RS03355 0.26 -1.2
703,477 + AMB_RS03355 0.26 -1.3
703,477 + AMB_RS03355 0.26 -0.4
703,477 + AMB_RS03355 0.26 -0.7
703,477 + AMB_RS03355 0.26 +0.2
703,478 - AMB_RS03355 0.26 -1.2
703,478 - AMB_RS03355 0.26 -0.4
703,478 - AMB_RS03355 0.26 +0.4
703,478 - AMB_RS03355 0.26 -0.4
703,478 - AMB_RS03355 0.26 +0.3
703,478 - AMB_RS03355 0.26 +0.0
703,651 - AMB_RS03355 0.41 +0.4
703,687 + AMB_RS03355 0.44 +0.1
703,687 + AMB_RS03355 0.44 -0.2
703,687 + AMB_RS03355 0.44 +0.0
703,687 + AMB_RS03355 0.44 +0.1
703,687 + AMB_RS03355 0.44 -1.2
703,687 + AMB_RS03355 0.44 +1.1
703,687 + AMB_RS03355 0.44 -2.2
703,687 + AMB_RS03355 0.44 +1.1
703,687 + AMB_RS03355 0.44 -0.2
703,688 - AMB_RS03355 0.45 -1.0
703,688 - AMB_RS03355 0.45 -1.2
703,688 - AMB_RS03355 0.45 -0.2
703,688 - AMB_RS03355 0.45 -1.4
703,693 + AMB_RS03355 0.45 -0.0
703,693 + AMB_RS03355 0.45 +0.3
703,693 + AMB_RS03355 0.45 -0.0
703,694 - AMB_RS03355 0.45 +0.4
703,694 - AMB_RS03355 0.45 +0.1
703,789 + AMB_RS03355 0.53 +0.5
703,789 + AMB_RS03355 0.53 -1.4
703,789 + AMB_RS03355 0.53 -0.4
703,790 - AMB_RS03355 0.53 -1.7
703,870 + AMB_RS03355 0.60 +0.3
703,870 + AMB_RS03355 0.60 +1.1
703,870 + AMB_RS03355 0.60 -1.4
703,871 - AMB_RS03355 0.60 -1.3
703,871 - AMB_RS03355 0.60 +1.0
703,871 - AMB_RS03355 0.60 -1.9
703,899 + AMB_RS03355 0.63 -2.3
703,962 + AMB_RS03355 0.68 -1.7
703,962 + AMB_RS03355 0.68 -0.7
703,963 - AMB_RS03355 0.68 -0.6
703,963 - AMB_RS03355 0.68 +0.4
703,963 - AMB_RS03355 0.68 +1.1
704,075 + AMB_RS03355 0.78 +0.1
704,075 + AMB_RS03355 0.78 -1.4
704,075 + AMB_RS03355 0.78 -0.1
704,075 + AMB_RS03355 0.78 -2.7
704,075 + AMB_RS03355 0.78 +0.2
704,076 - AMB_RS03355 0.78 -1.2
704,192 - AMB_RS03355 0.88 +0.9
704,326 + +0.0
704,326 + +1.1
704,326 + -2.0
704,326 + -0.9
704,326 + -1.2
704,326 + -2.3
704,326 + -0.9
704,327 - -0.9
704,327 - -0.3
704,327 - +0.1
704,327 - -2.6
704,327 - +0.2
704,327 - -0.4
704,420 + AMB_RS03360 0.20 -1.9
704,420 + AMB_RS03360 0.20 +0.3
704,420 + AMB_RS03360 0.20 -0.4
704,420 + AMB_RS03360 0.20 +1.1
704,420 + AMB_RS03360 0.20 +0.1
704,421 - AMB_RS03360 0.21 +0.1
704,421 - AMB_RS03360 0.21 -1.9
704,444 + AMB_RS03360 0.28 +0.6
704,500 + AMB_RS03360 0.47 -0.9
704,501 - AMB_RS03360 0.47 -1.2
704,501 - AMB_RS03360 0.47 -1.3
704,501 - AMB_RS03360 0.47 -0.4
704,506 + AMB_RS03360 0.49 -2.9
704,506 + AMB_RS03360 0.49 +0.4
704,506 + AMB_RS03360 0.49 -0.4
704,506 + AMB_RS03360 0.49 +0.5
704,507 - AMB_RS03360 0.49 -0.3
704,507 - AMB_RS03360 0.49 -0.0
704,600 + AMB_RS03360 0.80 +0.2
704,600 + AMB_RS03360 0.80 +0.1
704,601 - AMB_RS03360 0.80 -0.4
704,650 + -1.2
704,650 + +0.4
704,650 + -0.4
704,650 + +0.0
704,650 + -0.4
704,650 + -3.2
704,650 + +0.4
704,650 + +0.6
704,651 - -0.9
704,651 - -1.9
704,651 - -0.1
704,651 - -0.9
704,651 - +0.2
704,714 + +0.4
704,715 - -2.4
704,718 + -0.9
704,937 + -1.9
704,937 + +0.6
704,938 - -0.8
705,001 + -0.0
705,061 - -2.2
705,061 - -1.2
705,091 + -0.9
705,091 + +0.2
705,111 + -3.1
705,121 + -1.4
705,121 + +0.0
705,122 - -0.8
705,154 + AMB_RS03365 0.10 -1.9
705,155 - AMB_RS03365 0.10 -1.7
705,155 - AMB_RS03365 0.10 -0.2
705,312 - AMB_RS03365 0.22 +0.4
705,322 - AMB_RS03365 0.23 +0.5
705,356 + AMB_RS03365 0.25 -1.0
705,357 - AMB_RS03365 0.25 +0.2
705,357 - AMB_RS03365 0.25 +0.8
705,449 + AMB_RS03365 0.32 -2.0
705,452 - AMB_RS03365 0.33 +0.1
705,553 + AMB_RS03365 0.40 -1.2
705,553 + AMB_RS03365 0.40 -2.0
705,595 - AMB_RS03365 0.43 -0.4
705,595 - AMB_RS03365 0.43 +0.6

Or see this region's nucleotide sequence