Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03240

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03235 and AMB_RS03240 are separated by 91 nucleotidesAMB_RS03240 and AMB_RS03245 are separated by 193 nucleotides AMB_RS03235: AMB_RS03235 - flagellum-specific ATP synthase FliI, at 676,066 to 677,418 _RS03235 AMB_RS03240: AMB_RS03240 - DNA-binding response regulator, at 677,510 to 678,226 _RS03240 AMB_RS03245: AMB_RS03245 - 2-polyprenylphenol 6-hydroxylase, at 678,420 to 679,961 _RS03245 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1at 676.546 kb on + strand, within AMB_RS03235at 676.546 kb on + strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.570 kb on - strand, within AMB_RS03235at 676.570 kb on - strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.900 kb on - strand, within AMB_RS03235at 676.900 kb on - strand, within AMB_RS03235at 677.198 kb on + strand, within AMB_RS03235at 677.198 kb on + strand, within AMB_RS03235at 677.198 kb on + strand, within AMB_RS03235at 677.199 kb on - strand, within AMB_RS03235at 677.357 kb on + strandat 677.457 kb on + strandat 677.457 kb on + strandat 677.457 kb on + strandat 677.458 kb on - strandat 677.465 kb on + strandat 677.465 kb on + strandat 677.471 kb on + strandat 677.472 kb on - strandat 677.481 kb on + strandat 677.481 kb on + strandat 677.481 kb on + strandat 677.482 kb on - strandat 677.506 kb on + strandat 677.506 kb on + strandat 677.506 kb on + strandat 677.506 kb on + strandat 677.507 kb on - strandat 677.507 kb on - strandat 677.507 kb on - strandat 677.507 kb on - strandat 677.636 kb on + strand, within AMB_RS03240at 677.636 kb on + strand, within AMB_RS03240at 677.637 kb on - strand, within AMB_RS03240at 677.642 kb on + strand, within AMB_RS03240at 677.687 kb on + strand, within AMB_RS03240at 677.801 kb on + strand, within AMB_RS03240at 677.802 kb on - strand, within AMB_RS03240at 677.802 kb on - strand, within AMB_RS03240at 678.033 kb on + strand, within AMB_RS03240at 678.034 kb on - strand, within AMB_RS03240at 678.034 kb on - strand, within AMB_RS03240at 678.044 kb on + strand, within AMB_RS03240at 678.044 kb on + strand, within AMB_RS03240at 678.045 kb on - strand, within AMB_RS03240at 678.045 kb on - strand, within AMB_RS03240at 678.137 kb on + strand, within AMB_RS03240at 678.137 kb on + strand, within AMB_RS03240at 678.164 kb on + strandat 678.164 kb on + strandat 678.164 kb on + strandat 678.165 kb on - strandat 678.165 kb on - strandat 678.346 kb on - strandat 678.346 kb on - strandat 678.349 kb on + strandat 678.352 kb on - strandat 678.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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676,546 + AMB_RS03235 0.35 +0.4
676,546 + AMB_RS03235 0.35 +0.2
676,547 - AMB_RS03235 0.36 -1.2
676,547 - AMB_RS03235 0.36 -1.1
676,547 - AMB_RS03235 0.36 -1.9
676,547 - AMB_RS03235 0.36 -1.2
676,569 + AMB_RS03235 0.37 +0.1
676,569 + AMB_RS03235 0.37 -2.2
676,569 + AMB_RS03235 0.37 +0.6
676,569 + AMB_RS03235 0.37 -0.3
676,569 + AMB_RS03235 0.37 -0.9
676,569 + AMB_RS03235 0.37 -0.9
676,570 - AMB_RS03235 0.37 -0.9
676,570 - AMB_RS03235 0.37 -2.4
676,707 + AMB_RS03235 0.47 +0.1
676,707 + AMB_RS03235 0.47 -0.4
676,707 + AMB_RS03235 0.47 -0.0
676,707 + AMB_RS03235 0.47 -2.0
676,708 - AMB_RS03235 0.47 -1.7
676,708 - AMB_RS03235 0.47 -1.7
676,708 - AMB_RS03235 0.47 -1.2
676,708 - AMB_RS03235 0.47 -0.1
676,708 - AMB_RS03235 0.47 -1.4
676,709 + AMB_RS03235 0.48 +0.4
676,709 + AMB_RS03235 0.48 +0.1
676,709 + AMB_RS03235 0.48 -1.1
676,709 + AMB_RS03235 0.48 +0.2
676,709 + AMB_RS03235 0.48 -3.4
676,709 + AMB_RS03235 0.48 -1.7
676,709 + AMB_RS03235 0.48 +0.4
676,709 + AMB_RS03235 0.48 -1.2
676,709 + AMB_RS03235 0.48 -1.9
676,709 + AMB_RS03235 0.48 -0.3
676,709 + AMB_RS03235 0.48 +0.9
676,709 + AMB_RS03235 0.48 -1.9
676,710 - AMB_RS03235 0.48 +0.7
676,710 - AMB_RS03235 0.48 +0.2
676,710 - AMB_RS03235 0.48 -1.9
676,710 - AMB_RS03235 0.48 +0.1
676,899 + AMB_RS03235 0.62 -0.9
676,899 + AMB_RS03235 0.62 +0.4
676,899 + AMB_RS03235 0.62 +0.5
676,900 - AMB_RS03235 0.62 +1.1
676,900 - AMB_RS03235 0.62 -0.1
677,198 + AMB_RS03235 0.84 -0.5
677,198 + AMB_RS03235 0.84 -0.4
677,198 + AMB_RS03235 0.84 +0.1
677,199 - AMB_RS03235 0.84 +0.1
677,357 + +0.1
677,457 + -1.4
677,457 + +1.0
677,457 + +0.2
677,458 - -0.2
677,465 + -0.2
677,465 + -0.4
677,471 + -0.3
677,472 - -0.6
677,481 + -1.4
677,481 + -1.4
677,481 + -0.4
677,482 - +0.2
677,506 + -0.0
677,506 + -2.2
677,506 + +0.6
677,506 + -0.9
677,507 - +0.1
677,507 - -0.2
677,507 - -0.6
677,507 - +0.0
677,636 + AMB_RS03240 0.18 -0.1
677,636 + AMB_RS03240 0.18 -0.2
677,637 - AMB_RS03240 0.18 -0.3
677,642 + AMB_RS03240 0.18 -0.5
677,687 + AMB_RS03240 0.25 +1.1
677,801 + AMB_RS03240 0.41 +0.1
677,802 - AMB_RS03240 0.41 -1.9
677,802 - AMB_RS03240 0.41 +0.9
678,033 + AMB_RS03240 0.73 -1.7
678,034 - AMB_RS03240 0.73 -0.1
678,034 - AMB_RS03240 0.73 +0.0
678,044 + AMB_RS03240 0.74 -0.4
678,044 + AMB_RS03240 0.74 +0.0
678,045 - AMB_RS03240 0.75 -0.3
678,045 - AMB_RS03240 0.75 -0.1
678,137 + AMB_RS03240 0.87 +0.2
678,137 + AMB_RS03240 0.87 +0.5
678,164 + -1.0
678,164 + +0.2
678,164 + +0.1
678,165 - -0.5
678,165 - -0.1
678,346 - -0.8
678,346 - -2.2
678,349 + +0.3
678,352 - +0.1
678,421 + +0.1

Or see this region's nucleotide sequence