Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03115 and AMB_RS03120 overlap by 1 nucleotides AMB_RS03120 and AMB_RS03125 are separated by 105 nucleotides AMB_RS03125 and AMB_RS03130 are separated by 144 nucleotides
AMB_RS03115: AMB_RS03115 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 650,279 to 651,073
_RS03115
AMB_RS03120: AMB_RS03120 - phosphatidylserine decarboxylase family protein, at 651,073 to 651,795
_RS03120
AMB_RS03125: AMB_RS03125 - hypothetical protein, at 651,901 to 652,410
_RS03125
AMB_RS03130: AMB_RS03130 - LysM peptidoglycan-binding domain-containing protein, at 652,555 to 653,499
_RS03130
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 651.840 kb on - strand at 651.840 kb on - strand at 651.843 kb on - strand at 651.843 kb on - strand at 651.866 kb on - strand at 651.866 kb on - strand at 651.900 kb on + strand at 651.900 kb on + strand at 651.900 kb on + strand at 651.900 kb on + strand at 651.900 kb on + strand at 651.900 kb on + strand at 651.901 kb on - strand at 651.901 kb on - strand at 651.901 kb on - strand at 652.114 kb on + strand, within AMB_RS03125 at 652.114 kb on + strand, within AMB_RS03125 at 652.115 kb on - strand, within AMB_RS03125 at 652.309 kb on + strand, within AMB_RS03125 at 652.309 kb on + strand, within AMB_RS03125 at 652.309 kb on + strand, within AMB_RS03125 at 652.309 kb on + strand, within AMB_RS03125 at 652.310 kb on - strand, within AMB_RS03125 at 652.310 kb on - strand, within AMB_RS03125 at 652.311 kb on + strand, within AMB_RS03125 at 652.312 kb on - strand, within AMB_RS03125 at 652.312 kb on - strand, within AMB_RS03125 at 652.312 kb on - strand, within AMB_RS03125 at 652.330 kb on + strand, within AMB_RS03125 at 652.330 kb on + strand, within AMB_RS03125 at 652.330 kb on + strand, within AMB_RS03125 at 652.330 kb on + strand, within AMB_RS03125 at 652.330 kb on + strand, within AMB_RS03125 at 652.331 kb on - strand, within AMB_RS03125 at 652.331 kb on - strand, within AMB_RS03125 at 652.331 kb on - strand, within AMB_RS03125 at 652.422 kb on - strand at 652.452 kb on + strand at 652.540 kb on + strand at 652.540 kb on + strand at 652.540 kb on + strand at 652.540 kb on + strand at 652.641 kb on + strand at 652.641 kb on + strand at 652.641 kb on + strand at 652.642 kb on - strand at 652.643 kb on + strand at 652.643 kb on + strand at 652.643 kb on + strand at 652.643 kb on + strand at 652.643 kb on + strand at 652.644 kb on - strand at 652.662 kb on - strand, within AMB_RS03130 at 652.905 kb on - strand, within AMB_RS03130
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 651,840 - -0.1 651,840 - -0.1 651,843 - -1.2 651,843 - -1.4 651,866 - -0.9 651,866 - -2.3 651,900 + -0.9 651,900 + -2.0 651,900 + -1.4 651,900 + -2.2 651,900 + -1.2 651,900 + -0.4 651,901 - -1.1 651,901 - -2.0 651,901 - -2.3 652,114 + AMB_RS03125 0.42 -0.1 652,114 + AMB_RS03125 0.42 -0.9 652,115 - AMB_RS03125 0.42 +0.5 652,309 + AMB_RS03125 0.80 +0.0 652,309 + AMB_RS03125 0.80 +0.2 652,309 + AMB_RS03125 0.80 +0.5 652,309 + AMB_RS03125 0.80 +0.8 652,310 - AMB_RS03125 0.80 -1.7 652,310 - AMB_RS03125 0.80 +0.1 652,311 + AMB_RS03125 0.80 -1.7 652,312 - AMB_RS03125 0.81 +1.1 652,312 - AMB_RS03125 0.81 +0.2 652,312 - AMB_RS03125 0.81 -0.4 652,330 + AMB_RS03125 0.84 -2.0 652,330 + AMB_RS03125 0.84 +0.4 652,330 + AMB_RS03125 0.84 -1.4 652,330 + AMB_RS03125 0.84 -0.2 652,330 + AMB_RS03125 0.84 -2.0 652,331 - AMB_RS03125 0.84 -1.4 652,331 - AMB_RS03125 0.84 -1.2 652,331 - AMB_RS03125 0.84 +1.1 652,422 - -1.9 652,452 + -1.4 652,540 + -2.9 652,540 + -0.5 652,540 + -0.9 652,540 + +0.2 652,641 + +0.1 652,641 + +0.3 652,641 + -3.6 652,642 - -1.9 652,643 + -0.9 652,643 + +1.1 652,643 + -1.7 652,643 + -1.9 652,643 + +0.0 652,644 - -0.3 652,662 - AMB_RS03130 0.11 +0.3 652,905 - AMB_RS03130 0.37 +0.1
Or see this region's nucleotide sequence