Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03080 and AMB_RS03085 are separated by 94 nucleotides AMB_RS03085 and AMB_RS03090 are separated by 124 nucleotides
AMB_RS03080: AMB_RS03080 - prolyl aminopeptidase, at 643,903 to 644,844
_RS03080
AMB_RS03085: AMB_RS03085 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 644,939 to 645,976
_RS03085
AMB_RS03090: AMB_RS03090 - tRNA guanosine(34) transglycosylase Tgt, at 646,101 to 647,228
_RS03090
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 644.066 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.159 kb on + strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.160 kb on - strand, within AMB_RS03080 at 644.318 kb on + strand, within AMB_RS03080 at 644.319 kb on - strand, within AMB_RS03080 at 644.319 kb on - strand, within AMB_RS03080 at 644.319 kb on - strand, within AMB_RS03080 at 644.319 kb on - strand, within AMB_RS03080 at 644.492 kb on + strand, within AMB_RS03080 at 644.493 kb on - strand, within AMB_RS03080 at 644.493 kb on - strand, within AMB_RS03080 at 644.493 kb on - strand, within AMB_RS03080 at 644.598 kb on + strand, within AMB_RS03080 at 644.599 kb on - strand, within AMB_RS03080 at 644.693 kb on + strand, within AMB_RS03080 at 644.774 kb on + strand at 644.871 kb on + strand at 644.872 kb on - strand at 644.926 kb on + strand at 645.386 kb on + strand, within AMB_RS03085 at 645.386 kb on + strand, within AMB_RS03085 at 645.387 kb on - strand, within AMB_RS03085 at 645.387 kb on - strand, within AMB_RS03085 at 645.387 kb on - strand, within AMB_RS03085 at 645.387 kb on - strand, within AMB_RS03085 at 645.387 kb on - strand, within AMB_RS03085 at 645.388 kb on + strand, within AMB_RS03085 at 645.428 kb on + strand, within AMB_RS03085 at 645.428 kb on + strand, within AMB_RS03085 at 645.428 kb on + strand, within AMB_RS03085 at 645.899 kb on + strand at 645.900 kb on - strand at 645.924 kb on - strand at 645.932 kb on + strand at 645.932 kb on + strand at 645.932 kb on + strand at 645.933 kb on - strand at 645.938 kb on + strand at 645.938 kb on + strand at 645.972 kb on + strand at 645.972 kb on + strand at 645.972 kb on + strand at 645.972 kb on + strand at 645.973 kb on - strand at 645.986 kb on + strand at 645.987 kb on - strand at 645.987 kb on - strand at 646.284 kb on + strand, within AMB_RS03090 at 646.284 kb on + strand, within AMB_RS03090 at 646.284 kb on + strand, within AMB_RS03090 at 646.285 kb on - strand, within AMB_RS03090 at 646.285 kb on - strand, within AMB_RS03090 at 646.644 kb on + strand, within AMB_RS03090 at 646.677 kb on + strand, within AMB_RS03090 at 646.735 kb on - strand, within AMB_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 644,066 + AMB_RS03080 0.17 -1.4 644,159 + AMB_RS03080 0.27 -1.9 644,159 + AMB_RS03080 0.27 -1.2 644,159 + AMB_RS03080 0.27 -0.2 644,159 + AMB_RS03080 0.27 -0.6 644,159 + AMB_RS03080 0.27 +1.1 644,159 + AMB_RS03080 0.27 +0.1 644,159 + AMB_RS03080 0.27 +0.2 644,159 + AMB_RS03080 0.27 +0.2 644,160 - AMB_RS03080 0.27 -0.3 644,160 - AMB_RS03080 0.27 +0.3 644,160 - AMB_RS03080 0.27 -0.4 644,160 - AMB_RS03080 0.27 -0.9 644,160 - AMB_RS03080 0.27 +0.2 644,160 - AMB_RS03080 0.27 +0.0 644,160 - AMB_RS03080 0.27 -0.1 644,318 + AMB_RS03080 0.44 -0.9 644,319 - AMB_RS03080 0.44 +0.1 644,319 - AMB_RS03080 0.44 -1.4 644,319 - AMB_RS03080 0.44 +0.4 644,319 - AMB_RS03080 0.44 -1.9 644,492 + AMB_RS03080 0.63 -0.1 644,493 - AMB_RS03080 0.63 -2.2 644,493 - AMB_RS03080 0.63 -0.4 644,493 - AMB_RS03080 0.63 -0.0 644,598 + AMB_RS03080 0.74 +0.5 644,599 - AMB_RS03080 0.74 +0.2 644,693 + AMB_RS03080 0.84 -0.9 644,774 + +0.2 644,871 + -0.5 644,872 - -0.2 644,926 + +0.5 645,386 + AMB_RS03085 0.43 +0.2 645,386 + AMB_RS03085 0.43 -0.4 645,387 - AMB_RS03085 0.43 +0.5 645,387 - AMB_RS03085 0.43 -0.2 645,387 - AMB_RS03085 0.43 +0.6 645,387 - AMB_RS03085 0.43 -0.3 645,387 - AMB_RS03085 0.43 -0.9 645,388 + AMB_RS03085 0.43 +0.1 645,428 + AMB_RS03085 0.47 +0.5 645,428 + AMB_RS03085 0.47 +0.1 645,428 + AMB_RS03085 0.47 +0.9 645,899 + -0.3 645,900 - +0.2 645,924 - +0.0 645,932 + -0.7 645,932 + +1.1 645,932 + -1.2 645,933 - +0.2 645,938 + -1.4 645,938 + -0.5 645,972 + +0.0 645,972 + +0.4 645,972 + -1.4 645,972 + -0.4 645,973 - +1.1 645,986 + +1.3 645,987 - -0.8 645,987 - -2.2 646,284 + AMB_RS03090 0.16 +0.8 646,284 + AMB_RS03090 0.16 -0.9 646,284 + AMB_RS03090 0.16 +0.1 646,285 - AMB_RS03090 0.16 +0.8 646,285 - AMB_RS03090 0.16 -0.9 646,644 + AMB_RS03090 0.48 +0.4 646,677 + AMB_RS03090 0.51 -1.7 646,735 - AMB_RS03090 0.56 -0.4
Or see this region's nucleotide sequence