Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02650

Experiment: 30_an_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS02640 and AMB_RS02645 are separated by 100 nucleotidesAMB_RS02645 and AMB_RS02650 are separated by 37 nucleotidesAMB_RS02650 and AMB_RS02655 overlap by 4 nucleotidesAMB_RS02655 and AMB_RS02660 are separated by 16 nucleotides AMB_RS02640: AMB_RS02640 - phosphoglycerate kinase, at 549,941 to 551,188 _RS02640 AMB_RS02645: AMB_RS02645 - precorrin-4 C(11)-methyltransferase, at 551,289 to 552,050 _RS02645 AMB_RS02650: AMB_RS02650 - uroporphyrinogen-III C-methyltransferase, at 552,088 to 552,870 _RS02650 AMB_RS02655: AMB_RS02655 - sulfite exporter TauE/SafE family protein, at 552,867 to 553,625 _RS02655 AMB_RS02660: AMB_RS02660 - SCO family protein, at 553,642 to 554,244 _RS02660 Position (kb) 552 553Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.077 kb on + strandat 552.078 kb on - strandat 552.079 kb on - strandat 552.500 kb on - strand, within AMB_RS02650at 552.500 kb on - strand, within AMB_RS02650at 552.500 kb on - strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 553.103 kb on + strand, within AMB_RS02655at 553.104 kb on + strand, within AMB_RS02655at 553.104 kb on + strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.567 kb on + strandat 553.567 kb on + strandat 553.568 kb on - strandat 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
remove
552,072 + +0.1
552,072 + -2.9
552,072 + -1.9
552,072 + -2.3
552,073 - -3.4
552,073 - -1.2
552,073 - -0.3
552,073 - -1.4
552,073 - -2.4
552,073 - -1.4
552,073 - -3.5
552,073 - -1.9
552,073 - -2.9
552,073 - -1.0
552,073 - -0.3
552,073 - -3.0
552,073 - +1.1
552,074 + -0.4
552,074 + -0.0
552,074 + -2.9
552,074 + +0.3
552,074 + -1.2
552,074 + -3.8
552,075 - -0.5
552,075 - -0.5
552,075 - -2.0
552,075 - -1.3
552,075 - +1.1
552,075 - -0.9
552,075 - -2.0
552,075 - -1.2
552,077 + -1.0
552,078 - -1.7
552,079 - +0.2
552,500 - AMB_RS02650 0.53 -0.6
552,500 - AMB_RS02650 0.53 -2.0
552,500 - AMB_RS02650 0.53 -2.1
552,634 + AMB_RS02650 0.70 -0.8
552,634 + AMB_RS02650 0.70 -1.0
552,634 + AMB_RS02650 0.70 -0.9
552,634 + AMB_RS02650 0.70 -0.1
552,634 + AMB_RS02650 0.70 -0.4
552,634 + AMB_RS02650 0.70 -2.8
552,634 + AMB_RS02650 0.70 -0.7
552,634 + AMB_RS02650 0.70 -0.7
552,635 - AMB_RS02650 0.70 -1.6
552,635 - AMB_RS02650 0.70 -2.2
552,635 - AMB_RS02650 0.70 -0.1
552,635 - AMB_RS02650 0.70 +0.5
552,635 - AMB_RS02650 0.70 -0.7
552,635 - AMB_RS02650 0.70 -4.4
552,635 - AMB_RS02650 0.70 -1.3
552,635 - AMB_RS02650 0.70 -1.7
552,635 - AMB_RS02650 0.70 -0.9
553,103 + AMB_RS02655 0.31 -1.9
553,104 + AMB_RS02655 0.31 -0.9
553,104 + AMB_RS02655 0.31 -2.9
553,105 - AMB_RS02655 0.31 -1.7
553,105 - AMB_RS02655 0.31 -2.9
553,105 - AMB_RS02655 0.31 -0.2
553,105 - AMB_RS02655 0.31 -2.3
553,105 - AMB_RS02655 0.31 -0.8
553,128 + AMB_RS02655 0.34 -2.0
553,128 + AMB_RS02655 0.34 -0.9
553,128 + AMB_RS02655 0.34 -1.6
553,128 + AMB_RS02655 0.34 -0.7
553,128 + AMB_RS02655 0.34 -1.1
553,129 - AMB_RS02655 0.35 -0.5
553,129 - AMB_RS02655 0.35 -1.7
553,129 - AMB_RS02655 0.35 -0.4
553,129 - AMB_RS02655 0.35 -1.0
553,129 - AMB_RS02655 0.35 +1.1
553,129 - AMB_RS02655 0.35 +0.1
553,129 - AMB_RS02655 0.35 +0.3
553,129 - AMB_RS02655 0.35 -0.5
553,129 - AMB_RS02655 0.35 +0.2
553,129 - AMB_RS02655 0.35 -0.9
553,129 - AMB_RS02655 0.35 -1.2
553,129 - AMB_RS02655 0.35 -2.3
553,129 - AMB_RS02655 0.35 -0.4
553,129 - AMB_RS02655 0.35 +0.7
553,129 - AMB_RS02655 0.35 -2.9
553,129 - AMB_RS02655 0.35 -2.9
553,129 - AMB_RS02655 0.35 -0.0
553,129 - AMB_RS02655 0.35 -1.7
553,401 + AMB_RS02655 0.70 -0.5
553,401 + AMB_RS02655 0.70 -0.4
553,401 + AMB_RS02655 0.70 -1.0
553,401 + AMB_RS02655 0.70 -2.1
553,401 + AMB_RS02655 0.70 -0.3
553,402 - AMB_RS02655 0.70 -1.2
553,402 - AMB_RS02655 0.70 -4.2
553,402 - AMB_RS02655 0.70 -0.1
553,402 - AMB_RS02655 0.70 -1.3
553,402 - AMB_RS02655 0.70 +1.1
553,402 - AMB_RS02655 0.70 -0.5
553,402 - AMB_RS02655 0.70 -1.8
553,567 + -2.3
553,567 + -0.0
553,568 - -2.0
553,834 + AMB_RS02660 0.32 -2.9
553,834 + AMB_RS02660 0.32 -2.4
553,834 + AMB_RS02660 0.32 -3.7
553,834 + AMB_RS02660 0.32 -2.0

Or see this region's nucleotide sequence