Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02110 and AMB_RS23860 are separated by 395 nucleotides AMB_RS23860 and AMB_RS02120 are separated by 182 nucleotides AMB_RS02120 and AMB_RS02125 are separated by 344 nucleotides
AMB_RS02110: AMB_RS02110 - IS701 family transposase ISMmg4, at 443,510 to 444,817
_RS02110
AMB_RS23860: AMB_RS23860 - IS256 family transposase, at 445,213 to 445,566
_RS23860
AMB_RS02120: AMB_RS02120 - hypothetical protein, at 445,749 to 446,084
_RS02120
AMB_RS02125: AMB_RS02125 - LemA family protein, at 446,429 to 447,079
_RS02125
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 444.848 kb on - strand at 444.884 kb on - strand at 444.932 kb on + strand at 444.933 kb on - strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 445.039 kb on - strand at 445.044 kb on + strand at 445.044 kb on + strand at 445.045 kb on - strand at 445.074 kb on - strand at 445.090 kb on - strand at 445.090 kb on - strand at 445.209 kb on + strand at 445.210 kb on - strand at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.512 kb on + strand, within AMB_RS23860 at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.617 kb on + strand at 445.617 kb on + strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.684 kb on - strand at 445.689 kb on + strand at 445.692 kb on + strand at 445.692 kb on + strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.795 kb on - strand, within AMB_RS02120 at 445.824 kb on + strand, within AMB_RS02120 at 445.825 kb on - strand, within AMB_RS02120 at 445.853 kb on + strand, within AMB_RS02120 at 445.860 kb on + strand, within AMB_RS02120 at 445.860 kb on + strand, within AMB_RS02120 at 445.861 kb on - strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.909 kb on + strand, within AMB_RS02120 at 445.909 kb on + strand, within AMB_RS02120 at 445.938 kb on - strand, within AMB_RS02120 at 445.938 kb on - strand, within AMB_RS02120 at 445.948 kb on + strand, within AMB_RS02120 at 446.064 kb on + strand at 446.064 kb on + strand at 446.064 kb on + strand at 446.064 kb on + strand at 446.065 kb on - strand at 446.065 kb on - strand at 446.066 kb on + strand at 446.066 kb on + strand at 446.109 kb on - strand at 446.109 kb on - strand at 446.157 kb on + strand at 446.158 kb on - strand at 446.158 kb on - strand at 446.158 kb on - strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.162 kb on + strand at 446.302 kb on + strand at 446.350 kb on + strand at 446.351 kb on - strand at 446.398 kb on - strand at 446.435 kb on - strand at 446.502 kb on + strand, within AMB_RS02125 at 446.710 kb on - strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 447.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 444,848 - -1.5 444,884 - -3.2 444,932 + +0.3 444,933 - +0.4 444,942 + -0.8 444,942 + -1.4 444,942 + +0.2 444,942 + +0.4 444,943 - -2.3 444,943 - +0.2 444,943 - -0.8 444,943 - -1.8 444,949 - -2.9 444,949 - +0.0 444,949 - +0.2 444,949 - +0.2 444,949 - +0.6 445,039 - -1.1 445,044 + -1.4 445,044 + -1.8 445,045 - +0.2 445,074 - -0.4 445,090 - -2.9 445,090 - -0.8 445,209 + -1.0 445,210 - -0.0 445,282 - AMB_RS23860 0.19 +0.3 445,282 - AMB_RS23860 0.19 +0.0 445,282 - AMB_RS23860 0.19 -2.5 445,282 - AMB_RS23860 0.19 +0.4 445,512 + AMB_RS23860 0.84 -1.4 445,564 + -0.3 445,564 + -2.9 445,564 + -1.1 445,564 + +0.6 445,564 + -2.3 445,565 - -0.4 445,565 - -1.8 445,565 - +0.2 445,617 + +1.2 445,617 + +0.6 445,618 - -0.4 445,618 - +0.4 445,618 - -0.8 445,684 - -2.6 445,689 + -1.4 445,692 + -1.6 445,692 + +0.4 445,693 - +1.2 445,693 - -1.1 445,693 - -2.6 445,693 - +0.0 445,693 - +0.4 445,693 - +0.3 445,693 - -1.4 445,693 - -2.1 445,795 - AMB_RS02120 0.14 +0.1 445,824 + AMB_RS02120 0.22 -0.5 445,825 - AMB_RS02120 0.23 +0.2 445,853 + AMB_RS02120 0.31 -0.2 445,860 + AMB_RS02120 0.33 +0.1 445,860 + AMB_RS02120 0.33 -0.2 445,861 - AMB_RS02120 0.33 +0.5 445,875 + AMB_RS02120 0.38 -0.0 445,875 + AMB_RS02120 0.38 +0.2 445,875 + AMB_RS02120 0.38 -2.3 445,875 + AMB_RS02120 0.38 -0.8 445,875 + AMB_RS02120 0.38 -1.1 445,875 + AMB_RS02120 0.38 -1.8 445,876 - AMB_RS02120 0.38 +0.2 445,876 - AMB_RS02120 0.38 +0.9 445,876 - AMB_RS02120 0.38 -1.1 445,876 - AMB_RS02120 0.38 +0.6 445,876 - AMB_RS02120 0.38 -2.0 445,876 - AMB_RS02120 0.38 -0.1 445,876 - AMB_RS02120 0.38 -0.8 445,876 - AMB_RS02120 0.38 +0.3 445,876 - AMB_RS02120 0.38 -0.5 445,876 - AMB_RS02120 0.38 -2.5 445,876 - AMB_RS02120 0.38 +0.3 445,876 - AMB_RS02120 0.38 -1.5 445,909 + AMB_RS02120 0.48 -0.4 445,909 + AMB_RS02120 0.48 -0.0 445,938 - AMB_RS02120 0.56 -2.6 445,938 - AMB_RS02120 0.56 -1.8 445,948 + AMB_RS02120 0.59 +0.4 446,064 + -2.9 446,064 + -1.1 446,064 + -0.1 446,064 + +0.1 446,065 - +1.1 446,065 - -3.2 446,066 + -3.6 446,066 + -1.4 446,109 - -0.4 446,109 - -0.5 446,157 + -2.6 446,158 - -0.4 446,158 - -0.6 446,158 - -2.4 446,160 + -1.1 446,160 + -0.1 446,160 + -1.4 446,160 + -0.8 446,160 + -1.4 446,162 + +0.3 446,302 + -2.5 446,350 + -0.8 446,351 - -2.5 446,398 - -2.1 446,435 - -1.1 446,502 + AMB_RS02125 0.11 +1.2 446,710 - AMB_RS02125 0.43 +0.1 446,815 + AMB_RS02125 0.59 +0.7 446,815 + AMB_RS02125 0.59 +0.9 447,030 - -2.3
Or see this region's nucleotide sequence