Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01930 and AMB_RS01935 are separated by 130 nucleotides AMB_RS01935 and AMB_RS01940 are separated by 27 nucleotides AMB_RS01940 and AMB_RS01945 are separated by 2 nucleotides
AMB_RS01930: AMB_RS01930 - DUF4172 domain-containing protein, at 409,299 to 410,432
_RS01930
AMB_RS01935: AMB_RS01935 - hypothetical protein, at 410,563 to 410,991
_RS01935
AMB_RS01940: AMB_RS01940 - hypothetical protein, at 411,019 to 411,978
_RS01940
AMB_RS01945: AMB_RS01945 - hypothetical protein, at 411,981 to 412,496
_RS01945
Position (kb) 410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 409.618 kb on + strand, within AMB_RS01930 at 409.732 kb on + strand, within AMB_RS01930 at 410.226 kb on - strand, within AMB_RS01930 at 410.301 kb on - strand, within AMB_RS01930 at 410.428 kb on + strand at 410.429 kb on - strand at 410.429 kb on - strand at 410.429 kb on - strand at 410.526 kb on - strand at 410.544 kb on + strand at 410.545 kb on - strand at 410.737 kb on + strand, within AMB_RS01935 at 410.737 kb on + strand, within AMB_RS01935 at 410.738 kb on - strand, within AMB_RS01935 at 410.738 kb on - strand, within AMB_RS01935 at 410.738 kb on - strand, within AMB_RS01935 at 411.001 kb on + strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.001 kb on + strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.002 kb on - strand at 411.003 kb on + strand at 411.003 kb on + strand at 411.003 kb on + strand at 411.003 kb on + strand at 411.003 kb on + strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.004 kb on - strand at 411.005 kb on + strand at 411.005 kb on + strand at 411.005 kb on + strand at 411.005 kb on + strand at 411.005 kb on + strand at 411.006 kb on - strand at 411.006 kb on - strand at 411.006 kb on - strand at 411.006 kb on - strand at 411.006 kb on - strand at 411.006 kb on - strand at 411.037 kb on + strand at 411.037 kb on + strand at 411.037 kb on + strand at 411.038 kb on - strand at 411.080 kb on - strand at 411.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 409,618 + AMB_RS01930 0.28 -0.4 409,732 + AMB_RS01930 0.38 +0.1 410,226 - AMB_RS01930 0.82 -0.3 410,301 - AMB_RS01930 0.88 +0.3 410,428 + -1.3 410,429 - -0.0 410,429 - +0.4 410,429 - -2.1 410,526 - -1.1 410,544 + +0.2 410,545 - +0.3 410,737 + AMB_RS01935 0.41 +0.1 410,737 + AMB_RS01935 0.41 -0.8 410,738 - AMB_RS01935 0.41 -0.4 410,738 - AMB_RS01935 0.41 +0.7 410,738 - AMB_RS01935 0.41 +0.2 411,001 + -0.4 411,001 + -1.6 411,001 + +0.2 411,001 + -0.1 411,001 + -1.8 411,001 + -0.2 411,002 - +0.2 411,002 - -1.6 411,002 - -1.8 411,002 - -0.9 411,002 - -0.0 411,002 - -0.1 411,002 - -0.2 411,002 - -0.3 411,002 - -0.2 411,002 - -1.1 411,002 - -2.5 411,002 - +1.5 411,002 - +1.2 411,002 - -0.9 411,002 - +1.2 411,003 + -0.1 411,003 + -1.1 411,003 + +0.2 411,003 + -1.8 411,003 + +0.2 411,004 - -2.7 411,004 - +0.1 411,004 - -0.1 411,004 - -3.3 411,004 - +0.9 411,004 - -0.2 411,004 - -0.3 411,004 - -0.2 411,004 - -1.4 411,004 - -0.7 411,004 - -0.4 411,005 + -0.7 411,005 + +0.5 411,005 + -3.3 411,005 + -0.9 411,005 + -3.5 411,006 - -1.8 411,006 - -0.4 411,006 - -0.8 411,006 - -0.4 411,006 - +0.3 411,006 - +0.1 411,037 + -2.3 411,037 + -0.8 411,037 + -0.4 411,038 - -0.3 411,080 - -3.2 411,080 - -1.1
Or see this region's nucleotide sequence