Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01840 and AMB_RS01845 are separated by 2 nucleotides AMB_RS01845 and AMB_RS01850 overlap by 14 nucleotides AMB_RS01850 and AMB_RS01855 are separated by 258 nucleotides AMB_RS01855 and AMB_RS01860 are separated by 90 nucleotides
AMB_RS01840: AMB_RS01840 - DNA methyltransferase, at 396,192 to 397,745
_RS01840
AMB_RS01845: AMB_RS01845 - DNA methylase, at 397,748 to 399,019
_RS01845
AMB_RS01850: AMB_RS01850 - hypothetical protein, at 399,006 to 399,221
_RS01850
AMB_RS01855: AMB_RS01855 - hypothetical protein, at 399,480 to 399,689
_RS01855
AMB_RS01860: AMB_RS01860 - HU family DNA-binding protein, at 399,780 to 400,034
_RS01860
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 396.759 kb on + strand, within AMB_RS01840 at 396.759 kb on + strand, within AMB_RS01840 at 396.835 kb on + strand, within AMB_RS01840 at 396.911 kb on + strand, within AMB_RS01840 at 396.911 kb on + strand, within AMB_RS01840 at 396.911 kb on + strand, within AMB_RS01840 at 396.912 kb on - strand, within AMB_RS01840 at 397.326 kb on + strand, within AMB_RS01840 at 397.326 kb on + strand, within AMB_RS01840 at 397.327 kb on - strand, within AMB_RS01840 at 397.327 kb on - strand, within AMB_RS01840 at 397.327 kb on - strand, within AMB_RS01840 at 397.327 kb on - strand, within AMB_RS01840 at 397.419 kb on + strand, within AMB_RS01840 at 397.419 kb on + strand, within AMB_RS01840 at 397.419 kb on + strand, within AMB_RS01840 at 397.420 kb on - strand, within AMB_RS01840 at 397.420 kb on - strand, within AMB_RS01840 at 397.420 kb on - strand, within AMB_RS01840 at 397.420 kb on - strand, within AMB_RS01840 at 397.611 kb on + strand at 397.611 kb on + strand at 397.612 kb on - strand at 397.612 kb on - strand at 397.669 kb on - strand at 397.669 kb on - strand at 397.806 kb on - strand at 397.964 kb on - strand, within AMB_RS01845 at 398.015 kb on + strand, within AMB_RS01845 at 398.015 kb on + strand, within AMB_RS01845 at 398.015 kb on + strand, within AMB_RS01845 at 398.015 kb on + strand, within AMB_RS01845 at 398.017 kb on + strand, within AMB_RS01845 at 398.017 kb on + strand, within AMB_RS01845 at 398.018 kb on - strand, within AMB_RS01845 at 398.032 kb on + strand, within AMB_RS01845 at 398.032 kb on + strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.033 kb on - strand, within AMB_RS01845 at 398.375 kb on + strand, within AMB_RS01845 at 398.375 kb on + strand, within AMB_RS01845 at 398.376 kb on - strand, within AMB_RS01845 at 398.376 kb on - strand, within AMB_RS01845 at 398.495 kb on + strand, within AMB_RS01845 at 398.495 kb on + strand, within AMB_RS01845 at 398.496 kb on - strand, within AMB_RS01845 at 398.496 kb on - strand, within AMB_RS01845 at 398.496 kb on - strand, within AMB_RS01845 at 398.615 kb on + strand, within AMB_RS01845 at 398.642 kb on + strand, within AMB_RS01845 at 398.642 kb on + strand, within AMB_RS01845 at 398.642 kb on + strand, within AMB_RS01845 at 398.642 kb on + strand, within AMB_RS01845 at 398.643 kb on - strand, within AMB_RS01845 at 398.903 kb on + strand at 398.904 kb on - strand at 398.904 kb on - strand at 399.040 kb on + strand, within AMB_RS01850 at 399.053 kb on + strand, within AMB_RS01850 at 399.054 kb on - strand, within AMB_RS01850 at 399.127 kb on + strand, within AMB_RS01850 at 399.128 kb on - strand, within AMB_RS01850 at 399.145 kb on + strand, within AMB_RS01850 at 399.426 kb on + strand at 399.427 kb on - strand at 399.469 kb on - strand at 399.537 kb on + strand, within AMB_RS01855 at 399.568 kb on + strand, within AMB_RS01855 at 399.568 kb on + strand, within AMB_RS01855 at 399.654 kb on + strand, within AMB_RS01855 at 399.654 kb on + strand, within AMB_RS01855 at 399.655 kb on - strand, within AMB_RS01855 at 399.655 kb on - strand, within AMB_RS01855 at 399.685 kb on + strand at 399.685 kb on + strand at 399.685 kb on + strand at 399.686 kb on - strand at 399.686 kb on - strand at 399.696 kb on + strand at 399.729 kb on + strand at 399.729 kb on + strand at 399.729 kb on + strand at 399.770 kb on + strand at 399.770 kb on + strand at 399.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 396,759 + AMB_RS01840 0.36 -0.4 396,759 + AMB_RS01840 0.36 +0.3 396,835 + AMB_RS01840 0.41 -2.4 396,911 + AMB_RS01840 0.46 -2.3 396,911 + AMB_RS01840 0.46 -1.8 396,911 + AMB_RS01840 0.46 +0.4 396,912 - AMB_RS01840 0.46 -0.1 397,326 + AMB_RS01840 0.73 -0.4 397,326 + AMB_RS01840 0.73 -0.5 397,327 - AMB_RS01840 0.73 -0.1 397,327 - AMB_RS01840 0.73 -0.4 397,327 - AMB_RS01840 0.73 -2.0 397,327 - AMB_RS01840 0.73 -0.7 397,419 + AMB_RS01840 0.79 -0.8 397,419 + AMB_RS01840 0.79 -0.4 397,419 + AMB_RS01840 0.79 -2.4 397,420 - AMB_RS01840 0.79 +0.5 397,420 - AMB_RS01840 0.79 +0.2 397,420 - AMB_RS01840 0.79 -0.6 397,420 - AMB_RS01840 0.79 -0.2 397,611 + -0.1 397,611 + +0.5 397,612 - -0.8 397,612 - +0.2 397,669 - -0.8 397,669 - +0.8 397,806 - -2.4 397,964 - AMB_RS01845 0.17 -0.1 398,015 + AMB_RS01845 0.21 -0.8 398,015 + AMB_RS01845 0.21 -2.3 398,015 + AMB_RS01845 0.21 +0.8 398,015 + AMB_RS01845 0.21 -0.4 398,017 + AMB_RS01845 0.21 -0.4 398,017 + AMB_RS01845 0.21 -0.4 398,018 - AMB_RS01845 0.21 -0.4 398,032 + AMB_RS01845 0.22 -2.5 398,032 + AMB_RS01845 0.22 -1.4 398,033 - AMB_RS01845 0.22 +0.2 398,033 - AMB_RS01845 0.22 -2.6 398,033 - AMB_RS01845 0.22 -1.8 398,033 - AMB_RS01845 0.22 +0.0 398,033 - AMB_RS01845 0.22 -2.4 398,033 - AMB_RS01845 0.22 +0.7 398,375 + AMB_RS01845 0.49 -0.2 398,375 + AMB_RS01845 0.49 -0.6 398,376 - AMB_RS01845 0.49 -0.8 398,376 - AMB_RS01845 0.49 -2.0 398,495 + AMB_RS01845 0.59 -0.3 398,495 + AMB_RS01845 0.59 -3.0 398,496 - AMB_RS01845 0.59 +0.3 398,496 - AMB_RS01845 0.59 -2.9 398,496 - AMB_RS01845 0.59 -0.4 398,615 + AMB_RS01845 0.68 -0.3 398,642 + AMB_RS01845 0.70 -0.9 398,642 + AMB_RS01845 0.70 -0.4 398,642 + AMB_RS01845 0.70 -0.8 398,642 + AMB_RS01845 0.70 -3.4 398,643 - AMB_RS01845 0.70 +0.2 398,903 + +0.1 398,904 - -0.6 398,904 - +0.4 399,040 + AMB_RS01850 0.16 +0.2 399,053 + AMB_RS01850 0.22 -2.0 399,054 - AMB_RS01850 0.22 +0.1 399,127 + AMB_RS01850 0.56 -0.8 399,128 - AMB_RS01850 0.56 +0.9 399,145 + AMB_RS01850 0.64 -2.0 399,426 + +0.5 399,427 - -1.1 399,469 - -0.8 399,537 + AMB_RS01855 0.27 -0.1 399,568 + AMB_RS01855 0.42 -0.8 399,568 + AMB_RS01855 0.42 -1.8 399,654 + AMB_RS01855 0.83 -0.8 399,654 + AMB_RS01855 0.83 -1.1 399,655 - AMB_RS01855 0.83 -0.4 399,655 - AMB_RS01855 0.83 +0.2 399,685 + -1.4 399,685 + +0.2 399,685 + +0.1 399,686 - -0.3 399,686 - +0.5 399,696 + -2.8 399,729 + -1.1 399,729 + -1.4 399,729 + +0.2 399,770 + +0.2 399,770 + -2.3 399,771 - -0.2
Or see this region's nucleotide sequence