Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01570

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01565 and AMB_RS01570 are separated by 215 nucleotidesAMB_RS01570 and AMB_RS01575 are separated by 204 nucleotidesAMB_RS01575 and AMB_RS01580 are separated by 28 nucleotides AMB_RS01565: AMB_RS01565 - crotonyl-CoA carboxylase/reductase, at 348,092 to 349,348 _RS01565 AMB_RS01570: AMB_RS01570 - protein meaA, at 349,564 to 351,561 _RS01570 AMB_RS01575: AMB_RS01575 - arsenate reductase (glutaredoxin), at 351,766 to 352,113 _RS01575 AMB_RS01580: AMB_RS01580 - small-conductance mechanosensitive channel, at 352,142 to 353,422 _RS01580 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1at 348.813 kb on + strand, within AMB_RS01565at 349.047 kb on + strand, within AMB_RS01565at 349.047 kb on + strand, within AMB_RS01565at 349.047 kb on + strand, within AMB_RS01565at 349.048 kb on - strand, within AMB_RS01565at 349.048 kb on - strand, within AMB_RS01565at 349.048 kb on - strand, within AMB_RS01565at 349.048 kb on - strand, within AMB_RS01565at 349.048 kb on - strand, within AMB_RS01565at 349.098 kb on + strand, within AMB_RS01565at 349.099 kb on - strand, within AMB_RS01565at 349.099 kb on - strand, within AMB_RS01565at 349.146 kb on + strand, within AMB_RS01565at 349.147 kb on - strand, within AMB_RS01565at 349.147 kb on - strand, within AMB_RS01565at 349.147 kb on - strand, within AMB_RS01565at 349.272 kb on + strandat 349.272 kb on + strandat 349.272 kb on + strandat 349.272 kb on + strandat 349.272 kb on + strandat 349.272 kb on + strandat 349.272 kb on + strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.273 kb on - strandat 349.351 kb on + strandat 349.351 kb on + strandat 349.352 kb on - strandat 349.409 kb on + strandat 349.421 kb on + strandat 349.422 kb on - strandat 349.630 kb on + strandat 349.630 kb on + strandat 349.630 kb on + strandat 349.630 kb on + strandat 349.631 kb on - strandat 349.631 kb on - strandat 349.738 kb on + strandat 349.739 kb on - strandat 349.851 kb on + strand, within AMB_RS01570at 349.851 kb on + strand, within AMB_RS01570at 349.851 kb on + strand, within AMB_RS01570at 349.897 kb on + strand, within AMB_RS01570at 349.897 kb on + strand, within AMB_RS01570at 349.897 kb on + strand, within AMB_RS01570at 349.898 kb on - strand, within AMB_RS01570at 349.975 kb on + strand, within AMB_RS01570at 349.975 kb on + strand, within AMB_RS01570at 349.975 kb on + strand, within AMB_RS01570at 349.975 kb on + strand, within AMB_RS01570at 349.976 kb on - strand, within AMB_RS01570at 349.976 kb on - strand, within AMB_RS01570at 349.976 kb on - strand, within AMB_RS01570at 349.976 kb on - strand, within AMB_RS01570at 349.993 kb on + strand, within AMB_RS01570at 349.993 kb on + strand, within AMB_RS01570at 349.993 kb on + strand, within AMB_RS01570at 349.993 kb on + strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.994 kb on - strand, within AMB_RS01570at 349.995 kb on + strand, within AMB_RS01570at 349.995 kb on + strand, within AMB_RS01570at 349.995 kb on + strand, within AMB_RS01570at 349.995 kb on + strand, within AMB_RS01570at 349.996 kb on - strand, within AMB_RS01570at 349.996 kb on - strand, within AMB_RS01570at 350.051 kb on - strand, within AMB_RS01570at 350.051 kb on - strand, within AMB_RS01570at 350.051 kb on - strand, within AMB_RS01570at 350.092 kb on + strand, within AMB_RS01570at 350.093 kb on - strand, within AMB_RS01570at 350.093 kb on - strand, within AMB_RS01570at 350.093 kb on - strand, within AMB_RS01570at 350.093 kb on - strand, within AMB_RS01570at 350.410 kb on + strand, within AMB_RS01570at 350.410 kb on + strand, within AMB_RS01570at 350.557 kb on + strand, within AMB_RS01570at 350.557 kb on + strand, within AMB_RS01570at 350.557 kb on + strand, within AMB_RS01570at 350.557 kb on + strand, within AMB_RS01570at 350.557 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.704 kb on + strand, within AMB_RS01570at 350.705 kb on - strand, within AMB_RS01570at 350.705 kb on - strand, within AMB_RS01570at 350.705 kb on - strand, within AMB_RS01570at 350.705 kb on - strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.706 kb on + strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 350.707 kb on - strand, within AMB_RS01570at 351.052 kb on + strand, within AMB_RS01570at 351.053 kb on - strand, within AMB_RS01570at 351.256 kb on + strand, within AMB_RS01570at 351.257 kb on - strand, within AMB_RS01570at 351.398 kb on + strandat 351.399 kb on - strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.482 kb on - strandat 351.482 kb on - strandat 351.496 kb on + strandat 351.496 kb on + strandat 351.496 kb on + strandat 351.609 kb on + strandat 351.613 kb on + strandat 351.614 kb on - strandat 351.614 kb on - strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.707 kb on - strandat 351.707 kb on - strandat 351.767 kb on + strandat 351.767 kb on + strandat 352.011 kb on - strand, within AMB_RS01575at 352.059 kb on + strand, within AMB_RS01575at 352.060 kb on - strand, within AMB_RS01575at 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.160 kb on - strandat 352.160 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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348,813 + AMB_RS01565 0.57 -0.8
349,047 + AMB_RS01565 0.76 -1.8
349,047 + AMB_RS01565 0.76 -0.8
349,047 + AMB_RS01565 0.76 +0.8
349,048 - AMB_RS01565 0.76 -1.8
349,048 - AMB_RS01565 0.76 -0.3
349,048 - AMB_RS01565 0.76 -2.3
349,048 - AMB_RS01565 0.76 +0.2
349,048 - AMB_RS01565 0.76 -2.9
349,098 + AMB_RS01565 0.80 +1.2
349,099 - AMB_RS01565 0.80 +0.2
349,099 - AMB_RS01565 0.80 -0.2
349,146 + AMB_RS01565 0.84 +0.2
349,147 - AMB_RS01565 0.84 -0.1
349,147 - AMB_RS01565 0.84 +0.3
349,147 - AMB_RS01565 0.84 +1.2
349,272 + +0.1
349,272 + -0.0
349,272 + +0.2
349,272 + -1.1
349,272 + -0.0
349,272 + -1.5
349,272 + -2.6
349,273 - +0.2
349,273 - +0.3
349,273 - -0.4
349,273 - -0.0
349,273 - +0.2
349,273 - -0.4
349,273 - -1.4
349,273 - -0.8
349,351 + +0.5
349,351 + +0.5
349,352 - -0.8
349,409 + -0.8
349,421 + -1.1
349,422 - -0.4
349,630 + -2.4
349,630 + -0.8
349,630 + -1.8
349,630 + -0.4
349,631 - +0.5
349,631 - +0.7
349,738 + +0.2
349,739 - +0.3
349,851 + AMB_RS01570 0.14 -0.4
349,851 + AMB_RS01570 0.14 -2.0
349,851 + AMB_RS01570 0.14 -0.1
349,897 + AMB_RS01570 0.17 -1.1
349,897 + AMB_RS01570 0.17 -0.4
349,897 + AMB_RS01570 0.17 +0.5
349,898 - AMB_RS01570 0.17 -2.0
349,975 + AMB_RS01570 0.21 -0.6
349,975 + AMB_RS01570 0.21 +1.2
349,975 + AMB_RS01570 0.21 -0.7
349,975 + AMB_RS01570 0.21 +0.6
349,976 - AMB_RS01570 0.21 -2.0
349,976 - AMB_RS01570 0.21 +1.1
349,976 - AMB_RS01570 0.21 +0.3
349,976 - AMB_RS01570 0.21 -2.0
349,993 + AMB_RS01570 0.21 +0.2
349,993 + AMB_RS01570 0.21 -0.1
349,993 + AMB_RS01570 0.21 -1.1
349,993 + AMB_RS01570 0.21 -0.8
349,994 - AMB_RS01570 0.22 -0.3
349,994 - AMB_RS01570 0.22 -1.4
349,994 - AMB_RS01570 0.22 +1.2
349,994 - AMB_RS01570 0.22 +0.6
349,994 - AMB_RS01570 0.22 +0.2
349,994 - AMB_RS01570 0.22 -1.1
349,994 - AMB_RS01570 0.22 -0.8
349,995 + AMB_RS01570 0.22 +1.2
349,995 + AMB_RS01570 0.22 -1.8
349,995 + AMB_RS01570 0.22 +0.1
349,995 + AMB_RS01570 0.22 -0.4
349,996 - AMB_RS01570 0.22 -2.6
349,996 - AMB_RS01570 0.22 +0.2
350,051 - AMB_RS01570 0.24 +0.7
350,051 - AMB_RS01570 0.24 -0.2
350,051 - AMB_RS01570 0.24 -0.8
350,092 + AMB_RS01570 0.26 +0.0
350,093 - AMB_RS01570 0.26 +0.5
350,093 - AMB_RS01570 0.26 -1.8
350,093 - AMB_RS01570 0.26 -0.4
350,093 - AMB_RS01570 0.26 +0.4
350,410 + AMB_RS01570 0.42 -1.8
350,410 + AMB_RS01570 0.42 -2.4
350,557 + AMB_RS01570 0.50 -1.8
350,557 + AMB_RS01570 0.50 +0.0
350,557 + AMB_RS01570 0.50 -0.8
350,557 + AMB_RS01570 0.50 +0.2
350,557 + AMB_RS01570 0.50 -2.0
350,704 + AMB_RS01570 0.57 -1.6
350,704 + AMB_RS01570 0.57 +1.0
350,704 + AMB_RS01570 0.57 +0.0
350,704 + AMB_RS01570 0.57 -0.8
350,704 + AMB_RS01570 0.57 +1.2
350,704 + AMB_RS01570 0.57 +0.2
350,704 + AMB_RS01570 0.57 -1.1
350,705 - AMB_RS01570 0.57 -0.1
350,705 - AMB_RS01570 0.57 +0.0
350,705 - AMB_RS01570 0.57 -0.4
350,705 - AMB_RS01570 0.57 -1.6
350,706 + AMB_RS01570 0.57 -1.6
350,706 + AMB_RS01570 0.57 +0.6
350,706 + AMB_RS01570 0.57 -1.1
350,706 + AMB_RS01570 0.57 +1.0
350,706 + AMB_RS01570 0.57 -1.4
350,706 + AMB_RS01570 0.57 -0.0
350,707 - AMB_RS01570 0.57 -0.8
350,707 - AMB_RS01570 0.57 -0.0
350,707 - AMB_RS01570 0.57 -1.9
350,707 - AMB_RS01570 0.57 +0.2
350,707 - AMB_RS01570 0.57 -0.8
350,707 - AMB_RS01570 0.57 +0.4
350,707 - AMB_RS01570 0.57 -0.8
351,052 + AMB_RS01570 0.74 +0.1
351,053 - AMB_RS01570 0.75 +0.4
351,256 + AMB_RS01570 0.85 +0.1
351,257 - AMB_RS01570 0.85 -0.8
351,398 + +0.6
351,399 - -1.8
351,481 + +0.1
351,481 + -0.1
351,481 + +0.3
351,481 + -0.1
351,481 + -1.1
351,482 - -0.1
351,482 - -0.5
351,496 + -2.0
351,496 + -1.1
351,496 + -0.1
351,609 + -1.8
351,613 + -0.4
351,614 - -0.4
351,614 - -2.0
351,706 + -2.3
351,706 + -2.6
351,706 + +0.2
351,706 + -0.1
351,706 + +0.1
351,707 - -1.0
351,707 - -0.1
351,767 + -1.6
351,767 + +0.3
352,011 - AMB_RS01575 0.70 +0.2
352,059 + AMB_RS01575 0.84 -0.4
352,060 - AMB_RS01575 0.84 +0.2
352,091 + -0.1
352,091 + -0.4
352,091 + -1.4
352,091 + -1.6
352,091 + +0.3
352,092 - +0.8
352,092 - -1.0
352,092 - -0.4
352,092 - -2.9
352,092 - -1.6
352,092 - +0.3
352,092 - -2.9
352,160 - +0.1
352,160 - +0.3

Or see this region's nucleotide sequence