Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01465 and AMB_RS01470 are separated by 12 nucleotides AMB_RS01470 and AMB_RS01475 overlap by 32 nucleotides
AMB_RS01465: AMB_RS01465 - NADP-dependent malic enzyme, at 322,644 to 324,944
_RS01465
AMB_RS01470: AMB_RS01470 - two-component sensor histidine kinase, at 324,957 to 326,366
_RS01470
AMB_RS01475: AMB_RS01475 - MFS transporter, at 326,335 to 327,549
_RS01475
Position (kb) 324
325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 324.143 kb on + strand, within AMB_RS01465 at 324.210 kb on + strand, within AMB_RS01465 at 324.210 kb on + strand, within AMB_RS01465 at 324.211 kb on - strand, within AMB_RS01465 at 324.211 kb on - strand, within AMB_RS01465 at 324.212 kb on + strand, within AMB_RS01465 at 324.225 kb on + strand, within AMB_RS01465 at 324.225 kb on + strand, within AMB_RS01465 at 324.225 kb on + strand, within AMB_RS01465 at 324.225 kb on + strand, within AMB_RS01465 at 324.225 kb on + strand, within AMB_RS01465 at 324.226 kb on - strand, within AMB_RS01465 at 324.226 kb on - strand, within AMB_RS01465 at 324.226 kb on - strand, within AMB_RS01465 at 324.226 kb on - strand, within AMB_RS01465 at 324.361 kb on - strand, within AMB_RS01465 at 324.361 kb on - strand, within AMB_RS01465 at 324.434 kb on - strand, within AMB_RS01465 at 324.434 kb on - strand, within AMB_RS01465 at 324.434 kb on - strand, within AMB_RS01465 at 324.579 kb on + strand, within AMB_RS01465 at 324.580 kb on - strand, within AMB_RS01465 at 324.669 kb on + strand, within AMB_RS01465 at 324.670 kb on - strand, within AMB_RS01465 at 324.778 kb on - strand at 324.927 kb on + strand at 324.928 kb on - strand at 326.040 kb on + strand, within AMB_RS01470 at 326.370 kb on - strand at 326.435 kb on + strand at 326.435 kb on + strand at 326.435 kb on + strand at 326.436 kb on - strand at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.897 kb on + strand, within AMB_RS01475 at 326.898 kb on - strand, within AMB_RS01475 at 326.898 kb on - strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.137 kb on + strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.138 kb on - strand, within AMB_RS01475 at 327.170 kb on + strand, within AMB_RS01475 at 327.170 kb on + strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.171 kb on - strand, within AMB_RS01475 at 327.278 kb on + strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.279 kb on - strand, within AMB_RS01475 at 327.296 kb on + strand, within AMB_RS01475 at 327.296 kb on + strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.297 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475 at 327.357 kb on - strand, within AMB_RS01475
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 324,143 + AMB_RS01465 0.65 -1.4 324,210 + AMB_RS01465 0.68 -1.1 324,210 + AMB_RS01465 0.68 -0.8 324,211 - AMB_RS01465 0.68 -0.2 324,211 - AMB_RS01465 0.68 -0.1 324,212 + AMB_RS01465 0.68 -2.3 324,225 + AMB_RS01465 0.69 -0.2 324,225 + AMB_RS01465 0.69 -0.0 324,225 + AMB_RS01465 0.69 -2.8 324,225 + AMB_RS01465 0.69 -0.1 324,225 + AMB_RS01465 0.69 -2.0 324,226 - AMB_RS01465 0.69 -1.4 324,226 - AMB_RS01465 0.69 -2.0 324,226 - AMB_RS01465 0.69 -0.9 324,226 - AMB_RS01465 0.69 -1.1 324,361 - AMB_RS01465 0.75 +0.3 324,361 - AMB_RS01465 0.75 +0.5 324,434 - AMB_RS01465 0.78 -0.2 324,434 - AMB_RS01465 0.78 -0.0 324,434 - AMB_RS01465 0.78 -2.0 324,579 + AMB_RS01465 0.84 -0.6 324,580 - AMB_RS01465 0.84 +0.2 324,669 + AMB_RS01465 0.88 +1.2 324,670 - AMB_RS01465 0.88 +1.2 324,778 - -0.3 324,927 + -0.5 324,928 - -1.4 326,040 + AMB_RS01470 0.77 -0.3 326,370 - -3.9 326,435 + -2.3 326,435 + -2.4 326,435 + -0.1 326,436 - +0.1 326,897 + AMB_RS01475 0.46 -0.0 326,897 + AMB_RS01475 0.46 -0.3 326,897 + AMB_RS01475 0.46 +0.3 326,897 + AMB_RS01475 0.46 -2.1 326,898 - AMB_RS01475 0.46 +0.2 326,898 - AMB_RS01475 0.46 +0.2 327,137 + AMB_RS01475 0.66 -0.4 327,137 + AMB_RS01475 0.66 -1.6 327,137 + AMB_RS01475 0.66 -0.1 327,137 + AMB_RS01475 0.66 -1.6 327,137 + AMB_RS01475 0.66 -1.1 327,137 + AMB_RS01475 0.66 +0.3 327,138 - AMB_RS01475 0.66 +0.4 327,138 - AMB_RS01475 0.66 +0.2 327,138 - AMB_RS01475 0.66 -1.4 327,138 - AMB_RS01475 0.66 -0.3 327,138 - AMB_RS01475 0.66 -0.1 327,138 - AMB_RS01475 0.66 -0.7 327,138 - AMB_RS01475 0.66 -0.8 327,138 - AMB_RS01475 0.66 -1.6 327,170 + AMB_RS01475 0.69 -0.4 327,170 + AMB_RS01475 0.69 -0.1 327,171 - AMB_RS01475 0.69 -1.4 327,171 - AMB_RS01475 0.69 -0.4 327,171 - AMB_RS01475 0.69 -1.4 327,278 + AMB_RS01475 0.78 -0.6 327,279 - AMB_RS01475 0.78 -2.6 327,279 - AMB_RS01475 0.78 -1.8 327,279 - AMB_RS01475 0.78 -1.8 327,296 + AMB_RS01475 0.79 -2.1 327,296 + AMB_RS01475 0.79 -0.3 327,297 - AMB_RS01475 0.79 +0.2 327,297 - AMB_RS01475 0.79 -0.1 327,297 - AMB_RS01475 0.79 -1.1 327,297 - AMB_RS01475 0.79 +0.1 327,297 - AMB_RS01475 0.79 +0.3 327,297 - AMB_RS01475 0.79 -0.1 327,357 - AMB_RS01475 0.84 -0.3 327,357 - AMB_RS01475 0.84 -1.1 327,357 - AMB_RS01475 0.84 -0.0 327,357 - AMB_RS01475 0.84 -1.4 327,357 - AMB_RS01475 0.84 +0.1
Or see this region's nucleotide sequence