Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01460

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01455 and AMB_RS01460 are separated by 178 nucleotidesAMB_RS01460 and AMB_RS01465 are separated by 107 nucleotides AMB_RS01455: AMB_RS01455 - DNA mismatch repair protein MutS, at 319,224 to 321,830 _RS01455 AMB_RS01460: AMB_RS01460 - hypothetical protein, at 322,009 to 322,536 _RS01460 AMB_RS01465: AMB_RS01465 - NADP-dependent malic enzyme, at 322,644 to 324,944 _RS01465 Position (kb) 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1at 321.115 kb on + strand, within AMB_RS01455at 321.115 kb on + strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.615 kb on + strandat 321.616 kb on - strandat 321.640 kb on + strandat 321.641 kb on - strandat 321.757 kb on + strandat 321.758 kb on - strandat 321.776 kb on - strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.818 kb on - strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.893 kb on - strandat 321.913 kb on + strandat 321.913 kb on + strandat 321.914 kb on - strandat 322.024 kb on - strandat 322.059 kb on + strandat 322.059 kb on + strandat 322.060 kb on - strandat 322.060 kb on - strandat 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.464 kb on - strand, within AMB_RS01460at 322.700 kb on + strandat 322.700 kb on + strandat 322.701 kb on - strandat 322.701 kb on - strandat 322.806 kb on + strandat 322.807 kb on - strandat 322.864 kb on - strandat 322.869 kb on + strandat 322.870 kb on - strandat 322.870 kb on - strandat 322.870 kb on - strandat 323.064 kb on + strand, within AMB_RS01465at 323.064 kb on + strand, within AMB_RS01465at 323.065 kb on - strand, within AMB_RS01465at 323.065 kb on - strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.324 kb on - strand, within AMB_RS01465at 323.324 kb on - strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.469 kb on + strand, within AMB_RS01465at 323.469 kb on + strand, within AMB_RS01465at 323.470 kb on - strand, within AMB_RS01465at 323.470 kb on - strand, within AMB_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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321,115 + AMB_RS01455 0.73 -2.9
321,115 + AMB_RS01455 0.73 +0.4
321,116 - AMB_RS01455 0.73 -0.7
321,116 - AMB_RS01455 0.73 -0.2
321,116 - AMB_RS01455 0.73 -1.1
321,190 + AMB_RS01455 0.75 -0.4
321,190 + AMB_RS01455 0.75 -2.5
321,190 + AMB_RS01455 0.75 -1.4
321,190 + AMB_RS01455 0.75 -0.1
321,457 + AMB_RS01455 0.86 -1.1
321,457 + AMB_RS01455 0.86 -0.8
321,457 + AMB_RS01455 0.86 -0.4
321,457 + AMB_RS01455 0.86 -0.4
321,458 - AMB_RS01455 0.86 -1.7
321,458 - AMB_RS01455 0.86 -0.1
321,458 - AMB_RS01455 0.86 +0.0
321,615 + +0.4
321,616 - -2.0
321,640 + -2.3
321,641 - +0.3
321,757 + -1.1
321,758 - +0.7
321,776 - -0.1
321,817 + -0.3
321,817 + +1.2
321,817 + -0.8
321,817 + +0.1
321,818 - -0.8
321,881 + +0.4
321,881 + -0.4
321,881 + -2.6
321,893 - -1.2
321,913 + +0.1
321,913 + -0.1
321,914 - -1.6
322,024 - -1.1
322,059 + -1.8
322,059 + -1.4
322,060 - +0.4
322,060 - +0.5
322,240 + AMB_RS01460 0.44 +0.2
322,240 + AMB_RS01460 0.44 -1.4
322,240 + AMB_RS01460 0.44 -0.8
322,240 + AMB_RS01460 0.44 -0.4
322,240 + AMB_RS01460 0.44 +0.3
322,241 - AMB_RS01460 0.44 -0.1
322,241 - AMB_RS01460 0.44 -0.3
322,241 - AMB_RS01460 0.44 -0.2
322,463 + AMB_RS01460 0.86 -1.6
322,463 + AMB_RS01460 0.86 +0.9
322,464 - AMB_RS01460 0.86 -2.4
322,700 + -1.3
322,700 + +0.2
322,701 - +0.3
322,701 - -0.2
322,806 + -3.5
322,807 - +0.5
322,864 - +0.2
322,869 + +0.7
322,870 - -0.8
322,870 - -1.4
322,870 - -0.4
323,064 + AMB_RS01465 0.18 +0.2
323,064 + AMB_RS01465 0.18 -0.4
323,065 - AMB_RS01465 0.18 -0.8
323,065 - AMB_RS01465 0.18 -0.8
323,323 + AMB_RS01465 0.30 +0.2
323,323 + AMB_RS01465 0.30 -0.0
323,323 + AMB_RS01465 0.30 +0.8
323,324 - AMB_RS01465 0.30 -0.4
323,324 - AMB_RS01465 0.30 +0.2
323,367 + AMB_RS01465 0.31 +0.1
323,367 + AMB_RS01465 0.31 -0.3
323,367 + AMB_RS01465 0.31 -1.4
323,368 - AMB_RS01465 0.31 -0.2
323,368 - AMB_RS01465 0.31 -0.4
323,368 - AMB_RS01465 0.31 +0.5
323,368 - AMB_RS01465 0.31 -2.6
323,368 - AMB_RS01465 0.31 +0.7
323,368 - AMB_RS01465 0.31 -1.4
323,469 + AMB_RS01465 0.36 -1.1
323,469 + AMB_RS01465 0.36 +0.3
323,470 - AMB_RS01465 0.36 -1.6
323,470 - AMB_RS01465 0.36 -1.1

Or see this region's nucleotide sequence