Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01305 and AMB_RS01310 are separated by 2 nucleotides AMB_RS01310 and AMB_RS01315 are separated by 28 nucleotides AMB_RS01315 and AMB_RS01320 are separated by 118 nucleotides
AMB_RS01305: AMB_RS01305 - protocatechuate 4,5-dioxygenase subunit alpha, at 288,193 to 288,546
_RS01305
AMB_RS01310: AMB_RS01310 - protocatechuate 3,4-dioxygenase subunit beta, at 288,549 to 289,385
_RS01310
AMB_RS01315: AMB_RS01315 - 4-hydroxybenzoate 3-monooxygenase, at 289,414 to 290,589
_RS01315
AMB_RS01320: AMB_RS01320 - MFS transporter, at 290,708 to 292,105
_RS01320
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.428 kb on - strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.455 kb on - strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.466 kb on - strand, within AMB_RS01305 at 288.466 kb on - strand, within AMB_RS01305 at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.592 kb on - strand at 288.593 kb on + strand at 288.633 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.715 kb on - strand, within AMB_RS01310 at 288.715 kb on - strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.784 kb on - strand, within AMB_RS01310 at 289.211 kb on - strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.219 kb on - strand, within AMB_RS01310 at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.334 kb on + strand at 289.334 kb on + strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.384 kb on - strand at 289.384 kb on - strand at 289.384 kb on - strand at 289.525 kb on + strand at 289.526 kb on - strand at 289.526 kb on - strand at 289.712 kb on - strand, within AMB_RS01315 at 289.712 kb on - strand, within AMB_RS01315 at 289.777 kb on + strand, within AMB_RS01315 at 289.778 kb on - strand, within AMB_RS01315 at 289.834 kb on + strand, within AMB_RS01315 at 289.835 kb on - strand, within AMB_RS01315 at 289.835 kb on - strand, within AMB_RS01315 at 289.895 kb on - strand, within AMB_RS01315 at 289.954 kb on + strand, within AMB_RS01315 at 289.954 kb on + strand, within AMB_RS01315 at 289.955 kb on - strand, within AMB_RS01315 at 289.955 kb on - strand, within AMB_RS01315 at 289.955 kb on - strand, within AMB_RS01315 at 290.014 kb on + strand, within AMB_RS01315 at 290.014 kb on + strand, within AMB_RS01315 at 290.014 kb on + strand, within AMB_RS01315 at 290.015 kb on - strand, within AMB_RS01315 at 290.015 kb on - strand, within AMB_RS01315 at 290.075 kb on - strand, within AMB_RS01315 at 290.075 kb on - strand, within AMB_RS01315 at 290.075 kb on - strand, within AMB_RS01315 at 290.077 kb on + strand, within AMB_RS01315 at 290.077 kb on + strand, within AMB_RS01315 at 290.077 kb on + strand, within AMB_RS01315 at 290.077 kb on + strand, within AMB_RS01315 at 290.077 kb on + strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.078 kb on - strand, within AMB_RS01315 at 290.362 kb on + strand, within AMB_RS01315 at 290.362 kb on + strand, within AMB_RS01315 at 290.518 kb on + strand at 290.519 kb on - strand at 290.519 kb on - strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.563 kb on + strand at 290.564 kb on - strand at 290.564 kb on - strand at 290.564 kb on - strand at 290.564 kb on - strand at 290.564 kb on - strand at 290.564 kb on - strand at 290.603 kb on + strand at 290.687 kb on + strand at 290.688 kb on - strand at 290.688 kb on - strand at 290.768 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.841 kb on - strand at 290.841 kb on - strand at 290.841 kb on - strand at 290.843 kb on - strand at 290.843 kb on - strand at 290.843 kb on - strand at 291.125 kb on + strand, within AMB_RS01320 at 291.126 kb on - strand, within AMB_RS01320 at 291.126 kb on - strand, within AMB_RS01320 at 291.320 kb on + strand, within AMB_RS01320 at 291.321 kb on - strand, within AMB_RS01320 at 291.321 kb on - strand, within AMB_RS01320 at 291.479 kb on + strand, within AMB_RS01320 at 291.479 kb on + strand, within AMB_RS01320 at 291.479 kb on + strand, within AMB_RS01320 at 291.479 kb on + strand, within AMB_RS01320 at 291.479 kb on + strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.480 kb on - strand, within AMB_RS01320 at 291.512 kb on + strand, within AMB_RS01320 at 291.512 kb on + strand, within AMB_RS01320 at 291.513 kb on - strand, within AMB_RS01320 at 291.513 kb on - strand, within AMB_RS01320 at 291.513 kb on - strand, within AMB_RS01320 at 291.537 kb on - strand, within AMB_RS01320 at 291.537 kb on - strand, within AMB_RS01320 at 291.537 kb on - strand, within AMB_RS01320
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 288,427 + AMB_RS01305 0.66 -0.4 288,427 + AMB_RS01305 0.66 +0.8 288,427 + AMB_RS01305 0.66 +1.2 288,427 + AMB_RS01305 0.66 +0.5 288,427 + AMB_RS01305 0.66 +0.3 288,427 + AMB_RS01305 0.66 -0.1 288,428 - AMB_RS01305 0.66 +1.2 288,454 + AMB_RS01305 0.74 +1.2 288,454 + AMB_RS01305 0.74 +0.3 288,454 + AMB_RS01305 0.74 -0.0 288,454 + AMB_RS01305 0.74 -2.2 288,454 + AMB_RS01305 0.74 +0.5 288,454 + AMB_RS01305 0.74 -1.1 288,454 + AMB_RS01305 0.74 -0.8 288,454 + AMB_RS01305 0.74 -0.4 288,454 + AMB_RS01305 0.74 +0.5 288,454 + AMB_RS01305 0.74 +0.2 288,455 - AMB_RS01305 0.74 +0.0 288,465 + AMB_RS01305 0.77 +0.1 288,465 + AMB_RS01305 0.77 -2.6 288,465 + AMB_RS01305 0.77 +0.5 288,465 + AMB_RS01305 0.77 +0.0 288,465 + AMB_RS01305 0.77 +0.2 288,465 + AMB_RS01305 0.77 -2.8 288,465 + AMB_RS01305 0.77 +0.6 288,465 + AMB_RS01305 0.77 -2.1 288,465 + AMB_RS01305 0.77 -1.4 288,465 + AMB_RS01305 0.77 +0.6 288,465 + AMB_RS01305 0.77 +1.4 288,466 - AMB_RS01305 0.77 -1.1 288,466 - AMB_RS01305 0.77 +0.2 288,544 + +0.4 288,544 + +0.2 288,544 + -0.0 288,544 + -0.8 288,544 + -1.4 288,544 + +0.4 288,544 + -1.4 288,545 - -1.8 288,545 - +0.1 288,545 - -0.2 288,545 - -3.1 288,545 - -1.4 288,545 - -1.6 288,591 + +0.7 288,591 + -2.1 288,591 + -0.9 288,591 + +0.3 288,592 - +0.4 288,593 + +0.6 288,633 + AMB_RS01310 0.10 +0.5 288,714 + AMB_RS01310 0.20 +0.2 288,714 + AMB_RS01310 0.20 -1.8 288,714 + AMB_RS01310 0.20 -2.1 288,715 - AMB_RS01310 0.20 +1.2 288,715 - AMB_RS01310 0.20 -0.4 288,783 + AMB_RS01310 0.28 +0.3 288,783 + AMB_RS01310 0.28 +0.3 288,783 + AMB_RS01310 0.28 +0.4 288,783 + AMB_RS01310 0.28 +0.3 288,783 + AMB_RS01310 0.28 +0.6 288,784 - AMB_RS01310 0.28 +0.2 289,211 - AMB_RS01310 0.79 +1.2 289,218 + AMB_RS01310 0.80 +0.4 289,218 + AMB_RS01310 0.80 -0.7 289,218 + AMB_RS01310 0.80 +0.5 289,218 + AMB_RS01310 0.80 +0.4 289,219 - AMB_RS01310 0.80 -0.8 289,329 + -0.6 289,329 + -0.2 289,329 + -1.7 289,329 + -0.8 289,329 + +0.5 289,329 + +0.7 289,329 + +0.3 289,329 + -0.1 289,329 + -1.1 289,329 + -0.4 289,329 + -0.9 289,329 + -1.4 289,329 + +0.4 289,329 + +0.2 289,329 + +1.1 289,329 + +0.7 289,329 + +0.5 289,329 + +0.4 289,329 + -0.0 289,329 + +0.4 289,329 + -1.6 289,329 + +0.5 289,329 + +0.1 289,329 + -0.4 289,329 + -0.9 289,329 + -1.4 289,329 + +0.7 289,330 - -1.1 289,330 - +0.2 289,330 - +0.6 289,330 - +0.2 289,330 - +0.4 289,330 - -0.8 289,330 - +1.3 289,330 - -1.1 289,334 + -1.4 289,334 + -0.4 289,335 - -0.4 289,335 - -2.8 289,335 - -2.9 289,335 - -1.4 289,335 - +0.8 289,383 + +1.5 289,383 + +0.2 289,383 + +0.4 289,383 + -0.4 289,383 + +0.6 289,383 + -1.8 289,383 + -2.8 289,383 + -0.0 289,383 + +0.1 289,384 - -1.4 289,384 - -1.6 289,384 - -2.5 289,525 + -0.1 289,526 - -0.0 289,526 - +0.2 289,712 - AMB_RS01315 0.25 -2.9 289,712 - AMB_RS01315 0.25 -2.2 289,777 + AMB_RS01315 0.31 -0.4 289,778 - AMB_RS01315 0.31 -1.3 289,834 + AMB_RS01315 0.36 -1.1 289,835 - AMB_RS01315 0.36 -0.1 289,835 - AMB_RS01315 0.36 -3.0 289,895 - AMB_RS01315 0.41 -1.4 289,954 + AMB_RS01315 0.46 -1.6 289,954 + AMB_RS01315 0.46 +0.7 289,955 - AMB_RS01315 0.46 -0.2 289,955 - AMB_RS01315 0.46 +1.2 289,955 - AMB_RS01315 0.46 +1.2 290,014 + AMB_RS01315 0.51 -1.8 290,014 + AMB_RS01315 0.51 -2.7 290,014 + AMB_RS01315 0.51 -1.6 290,015 - AMB_RS01315 0.51 -3.2 290,015 - AMB_RS01315 0.51 -2.1 290,075 - AMB_RS01315 0.56 -1.1 290,075 - AMB_RS01315 0.56 +0.3 290,075 - AMB_RS01315 0.56 -1.4 290,077 + AMB_RS01315 0.56 -1.6 290,077 + AMB_RS01315 0.56 +0.1 290,077 + AMB_RS01315 0.56 -0.8 290,077 + AMB_RS01315 0.56 -1.1 290,077 + AMB_RS01315 0.56 -2.1 290,078 - AMB_RS01315 0.56 +0.3 290,078 - AMB_RS01315 0.56 -1.3 290,078 - AMB_RS01315 0.56 -0.1 290,078 - AMB_RS01315 0.56 +0.3 290,078 - AMB_RS01315 0.56 -0.4 290,078 - AMB_RS01315 0.56 +0.7 290,362 + AMB_RS01315 0.81 +1.2 290,362 + AMB_RS01315 0.81 +0.6 290,518 + +0.6 290,519 - +0.2 290,519 - +0.2 290,563 + -1.6 290,563 + +0.5 290,563 + -1.4 290,563 + -1.8 290,563 + -3.3 290,563 + -1.1 290,563 + +0.4 290,563 + +0.3 290,563 + -0.4 290,564 - +0.1 290,564 - -0.3 290,564 - -0.4 290,564 - +0.8 290,564 - +0.5 290,564 - -0.8 290,603 + -1.1 290,687 + +0.3 290,688 - -0.6 290,688 - +0.6 290,768 + +0.7 290,840 + -2.2 290,840 + -0.1 290,840 + +0.2 290,841 - +0.5 290,841 - +1.2 290,841 - -0.5 290,843 - -0.5 290,843 - -0.5 290,843 - -1.8 291,125 + AMB_RS01320 0.30 -1.6 291,126 - AMB_RS01320 0.30 -2.2 291,126 - AMB_RS01320 0.30 +0.2 291,320 + AMB_RS01320 0.44 -3.2 291,321 - AMB_RS01320 0.44 -2.1 291,321 - AMB_RS01320 0.44 -3.0 291,479 + AMB_RS01320 0.55 -0.8 291,479 + AMB_RS01320 0.55 -0.1 291,479 + AMB_RS01320 0.55 +0.2 291,479 + AMB_RS01320 0.55 -1.4 291,479 + AMB_RS01320 0.55 +0.1 291,480 - AMB_RS01320 0.55 -0.2 291,480 - AMB_RS01320 0.55 -1.4 291,480 - AMB_RS01320 0.55 -2.2 291,480 - AMB_RS01320 0.55 -2.4 291,480 - AMB_RS01320 0.55 -1.9 291,480 - AMB_RS01320 0.55 -1.4 291,512 + AMB_RS01320 0.58 -0.1 291,512 + AMB_RS01320 0.58 -1.8 291,513 - AMB_RS01320 0.58 +0.3 291,513 - AMB_RS01320 0.58 -0.4 291,513 - AMB_RS01320 0.58 +0.3 291,537 - AMB_RS01320 0.59 -0.8 291,537 - AMB_RS01320 0.59 -0.3 291,537 - AMB_RS01320 0.59 +0.2
Or see this region's nucleotide sequence