Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00565

Experiment: 30_an_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00560 and AMB_RS00565 are separated by 121 nucleotides AMB_RS00560: AMB_RS00560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 128,152 to 129,339 _RS00560 AMB_RS00565: AMB_RS00565 - acyltransferase, at 129,461 to 130,039 _RS00565 Position (kb) 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1at 130.226 kb on + strandat 130.227 kb on - strandat 130.280 kb on + strandat 130.395 kb on - strandat 130.407 kb on - strandat 130.455 kb on - strandat 130.609 kb on + strandat 130.699 kb on + strandat 130.720 kb on + strandat 130.721 kb on - strandat 130.941 kb on - strandat 130.947 kb on + strandat 130.947 kb on + strandat 130.947 kb on + strandat 130.948 kb on - strandat 130.982 kb on - strandat 131.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_1
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130,226 + +0.3
130,227 - -2.2
130,280 + -0.2
130,395 - -0.4
130,407 - +0.7
130,455 - +0.1
130,609 + -1.9
130,699 + -0.8
130,720 + +0.2
130,721 - -0.1
130,941 - -1.1
130,947 + +0.0
130,947 + -2.9
130,947 + -0.6
130,948 - -0.1
130,982 - -1.1
131,028 + -0.1

Or see this region's nucleotide sequence