Experiment: 30_an_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00440 and AMB_RS00445 overlap by 1 nucleotides AMB_RS00445 and AMB_RS00450 are separated by 53 nucleotides
AMB_RS00440: AMB_RS00440 - hypothetical protein, at 96,266 to 98,272
_RS00440
AMB_RS00445: AMB_RS00445 - acylneuraminate cytidylyltransferase family protein, at 98,272 to 98,976
_RS00445
AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166
_RS00450
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 98.243 kb on + strand at 98.965 kb on - strand at 98.965 kb on - strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.088 kb on - strand at 99.088 kb on - strand at 99.088 kb on - strand at 99.237 kb on + strand, within AMB_RS00450 at 99.237 kb on + strand, within AMB_RS00450 at 99.238 kb on - strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.380 kb on + strand, within AMB_RS00450 at 99.380 kb on + strand, within AMB_RS00450 at 99.394 kb on - strand, within AMB_RS00450 at 99.394 kb on - strand, within AMB_RS00450 at 99.405 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.433 kb on - strand, within AMB_RS00450 at 99.433 kb on - strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.445 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.544 kb on - strand, within AMB_RS00450 at 99.544 kb on - strand, within AMB_RS00450 at 99.846 kb on + strand, within AMB_RS00450 at 99.873 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_1 remove 98,243 + +0.2 98,965 - +0.3 98,965 - -0.1 99,087 + +0.5 99,087 + +0.4 99,087 + -2.7 99,087 + +0.2 99,087 + -1.4 99,088 - -2.2 99,088 - -1.8 99,088 - -0.4 99,237 + AMB_RS00450 0.18 -0.2 99,237 + AMB_RS00450 0.18 +0.0 99,238 - AMB_RS00450 0.18 +0.2 99,378 + AMB_RS00450 0.31 -0.0 99,378 + AMB_RS00450 0.31 -0.4 99,378 + AMB_RS00450 0.31 +0.1 99,378 + AMB_RS00450 0.31 +0.4 99,379 - AMB_RS00450 0.31 -0.0 99,379 - AMB_RS00450 0.31 -1.2 99,379 - AMB_RS00450 0.31 -0.4 99,380 + AMB_RS00450 0.31 -1.9 99,380 + AMB_RS00450 0.31 -0.5 99,394 - AMB_RS00450 0.32 +1.2 99,394 - AMB_RS00450 0.32 -1.4 99,405 + AMB_RS00450 0.33 -2.1 99,432 + AMB_RS00450 0.35 +0.3 99,432 + AMB_RS00450 0.35 -0.9 99,432 + AMB_RS00450 0.35 +0.2 99,432 + AMB_RS00450 0.35 -0.4 99,432 + AMB_RS00450 0.35 -0.1 99,432 + AMB_RS00450 0.35 +0.1 99,433 - AMB_RS00450 0.35 +1.2 99,433 - AMB_RS00450 0.35 -2.8 99,438 + AMB_RS00450 0.36 -0.2 99,438 + AMB_RS00450 0.36 +0.0 99,438 + AMB_RS00450 0.36 +0.2 99,445 + AMB_RS00450 0.36 +0.2 99,543 + AMB_RS00450 0.45 +0.5 99,543 + AMB_RS00450 0.45 -1.8 99,543 + AMB_RS00450 0.45 -1.1 99,543 + AMB_RS00450 0.45 -0.2 99,544 - AMB_RS00450 0.45 -1.1 99,544 - AMB_RS00450 0.45 -1.4 99,846 + AMB_RS00450 0.72 -0.4 99,873 + AMB_RS00450 0.74 +1.0 99,924 + AMB_RS00450 0.79 +0.1 99,924 + AMB_RS00450 0.79 +0.2 99,924 + AMB_RS00450 0.79 -1.0
Or see this region's nucleotide sequence